Lk_Exposure_Material

Controlled vocabulary for exposure material

Columns
Name Type Description Foreign Key
name varchar(200) Name or identifier
exposure_material_id varchar(50)
description varchar(1000) Free text to expand upon details
link varchar(2000) Link to URL
Indexes
Name Column Description
PRIMARY name BTREE
Tables that Reference this Table
Name Column Table Reference Column Reference
immune_exposure exposure_material_preferred lk_exposure_material name
Values
name exposure_material_id description link
2008-2009 trivalent influenza vaccine VO:0004809 2008-2009 trivalent influenza vaccine http://purl.obolibrary.org/obo/VO_0004809
2011-2012 trivalent inactivated vaccine (A/California/7/09 (H1N1), A/Perth /16/2009 (H3N2), and B/Brisbane/60/2008) VO:0004810 2011-2012 trivalent inactivated vaccine (A/California/7/09 (H1N1), A/Perth /16/2009 (H3N2), and B/Brisbane/60/2008) http://purl.obolibrary.org/obo/VO_0004810
ACWY Vax VO:0003138 ACWY Vax http://purl.obolibrary.org/obo/VO_0003138
Ad35.CS.01 malaria vaccine VO:0004993 A P. falciparum malaria vaccine that is formed by tull length CS-expressing replication-deficient recombinant human adenovirus 35. http://purl.obolibrary.org/obo/VO_0004993
AdCOVID VO_0005153 AdCOVID http://purl.obolibrary.org/obo/VO_0005153
Alternaria alternata NCBITaxon:5599 species, ascomycetes http://purl.obolibrary.org/obo/NCBITaxon_5599
BCG Vaccine VO:0000771 BCG Vaccine is a Mycobacterium tuberculosis vaccine that is a live attenuated strain of Mycobacterium bovis (Bacillus Calmette Guerin; BCG). http://purl.obolibrary.org/obo/VO_0000771
Borreliella burgdorferi NCBITaxon:139 Borreliella burgdorferi http://purl.obolibrary.org/obo/NCBITaxon_139
Chikungunya virus NCBITaxon:37124 Found from reported data using NCBI Taxomony Dump: 37124 http://purl.obolibrary.org/obo/NCBITaxon_37124
Chlamydia trachomatis NCBITaxon:813 Chlamydia trachomatis https://ontobee.org/ontology/NCBITaxon?iri=http://purl.obolibrary.org/obo/NCBITaxon_813
CureVac AG VO:0005208 CureVac AG http://purl.obolibrary.org/obo/VO_0005208
Cytomegalovirus NCBITaxon:10358 Cytomegalovirus http://purl.obolibrary.org/obo/NCBITaxon_10358
Dengue virus NCBITaxon:12637 Dengue virus http://purl.obolibrary.org/obo/NCBITaxon_12637
Dengue virus 1 NCBITaxon:11053 Dengue virus 1 http://purl.obolibrary.org/obo/NCBITaxon_11053
Dengue virus 2 NCBITaxon:11060 Dengue virus 2 http://purl.obolibrary.org/obo/NCBITaxon_11060
Dengue virus 3 NCBITaxon:11069 Found from reported data using NCBI Taxomony Dump: 11069 http://purl.obolibrary.org/obo/NCBITaxon_11069
diphtheria, tetanus and whole cell pertussis vaccine VO:0003106 diphtheria, tetanus and whole cell pertussis vaccine http://purl.obolibrary.org/obo/VO_0003106
Diphtheria-Tetanus-Pertussis vaccine VO:0000738 Diphtheria-Tetanus-Pertussis vaccine http://purl.obolibrary.org/obo/VO_0000738
Dryvax VO:0000035 a vaccinia virus vaccine that is a freeze-dried calf lymph smallpox vaccine, specifically, Dryvax is a live-virus preparation of vaccinia prepared from calf lymph. http://purl.obolibrary.org/obo/VO_0000035
Engerix-B VO:0010711 Engerix-B http://purl.obolibrary.org/obo/VO_0010711
Fluarix VO:0000045 Fluarix http://purl.obolibrary.org/obo/VO_0000045
FluMist VO:0000044 FluMist http://purl.obolibrary.org/obo/VO_0000044
Fluvirin VO:0000046 Fluvirin http://purl.obolibrary.org/obo/VO_0000046
Fluzone VO:0000047 Fluzone http://purl.obolibrary.org/obo/VO_0000047
Hepacivirus C NCBITaxon:11103 Found from reported data using NCBI Taxomony Dump: 11103 http://purl.obolibrary.org/obo/NCBITaxon_11103
Hepatitis B surface antigen vaccine VO_0003150 A Hepatitis B virus vaccine that uses recombinant Hepatitis B surface antigen as the antigen http://purl.obolibrary.org/obo/VO_0003150
Hepatitis B Surface Antigen Vaccine Injection [Heplisav-B] VO_0003270 Hepatitis B Surface Antigen Vaccine Injection [Heplisav-B] http://purl.obolibrary.org/obo/VO_0003270
Hepatitis B Surface Antigen Vaccine Prefilled Syringe [Engerix-B] VO_0003258 Hepatitis B Surface Antigen Vaccine Prefilled Syringe [Engerix-B] http://purl.obolibrary.org/obo/VO_0003258
Hepatitis B virus NCBITaxon:10407 Hepatitis B virus http://purl.obolibrary.org/obo/NCBITaxon_10407
Hepatitis B virus vaccine VO_0000644 A viral vaccine that protects against infection with Hepatitis B virus. http://purl.obolibrary.org/obo/VO_0000644
HEPLISAV-B VO:0003152 A Hepatitis B surface antigen viral vaccine that utilizes a cytidine-phosphate-guanosine oligodeoxynucleotide (CpGODN) 1018, as an adjuvant. http://purl.obolibrary.org/obo/VO_0003152
Human alphaherpesvirus 3 NCBITaxon:10335 Human alphaherpesvirus 3 http://purl.obolibrary.org/obo/NCBITaxon_10335
Human gammaherpesvirus 4 (Epstein-Barr virus) NCBITaxon:10376 Human gammaherpesvirus 4 (Epstein-Barr virus) http://purl.obolibrary.org/obo/NCBITaxon_10376
human immunodeficiency virus infectious disease DOID:526 A viral infectious disease that results in destruction of immune system, leading to life-threatening opportunistic infections and cancers, has_material_basis_in Human immunodeficiency virus 1 or has_material_basis_in Human immunodeficiency virus 2, which are transmitted by sexual contact, transmitted by transfer of blood, semen, vaginal fluid, pre-ejaculate, or breast milk, transmitted by congenital method, and transmitted by contaminated needles. The virus infects helper T cells (CD4+ T cells) which are directly or indirectly destroyed, macrophages, and dendritic cells. The infection has symptom diarrhea, has symptom fatigue, has symptom fever, has symptom vaginal yeast infection, has symptom headache, has symptom mouth sores, has symptom muscle aches, has symptom sore throat, and has symptom swollen lymph glands. http://purl.obolibrary.org/obo/DOID_526
human immunodeficiency virus vaccine VO_0000295 A viral vaccine that protects against infection with human immunodeficiency virus that causes AIDS. http://purl.obolibrary.org/obo/VO_0000295
Human rhinovirus A16 NCBITaxon:31708 Found from reported data using NCBI Taxomony Dump: 31708 http://purl.obolibrary.org/obo/NCBITaxon_31708
inactivated influenza vaccine VO_0001176 inactivated influenza vaccine is an inactivated viral vaccine that targets at influenza viral infections. http://purl.obolibrary.org/obo/VO_0001176
Influenza A H1N1 2009 Monovalent Vaccine Novartis VO:0000081 Influenza A (H1N1) 2009 Monovalent Vaccine (Novartis) http://purl.obolibrary.org/obo/VO_0000081
Influenza A virus NCBITaxon:11320 Influenza A virus http://purl.obolibrary.org/obo/NCBITaxon_11320
Influenza A virus (A/California/7/2009(H1N1)) NCBITaxon:1316510 Found from reported data using NCBI Taxomony Dump: 1316510 http://purl.obolibrary.org/obo/NCBITaxon_1316510
Influenza A virus (A/reassortant/FluMist(California/07/2009 x Ann Arbor/6/1960)(H1N1)) NCBITaxon:1701435 Found from reported data using NCBI Taxomony Dump: 1701435 http://purl.obolibrary.org/obo/NCBITaxon_1701435
Influenza virus vaccine VO:0000642 A viral vaccine that protects against infection with influenza virus. http://purl.obolibrary.org/obo/VO_0000642
Influvac VO_0000867 Influvac is an Influenza virus vaccine that is manufactured by Solvay Pharma. http://purl.obolibrary.org/obo/VO_0000867
Ionizing Radiation NCIT:C17052 High-energy radiation capable of producing ionization in substances through which it passes. http://purl.obolibrary.org/obo/NCIT_C17052
Johnson & Johnson COVID-19 vaccine VO:0005159 A SARS-CoV-2 recombinant viral vector vaccine composed of Ad26 vector expressing S protein, Ad26COVS1; JNJ-78436735 http://purl.obolibrary.org/obo/VO_0005159
LC16m8 VO:0004091 LC16m8 http://purl.obolibrary.org/obo/VO_0004091
live attenuated influenza vaccine VO_0001178 live attenuated influenza vaccine is a live attenuated vaccine that protects against influenza viral infection. http://purl.obolibrary.org/obo/VO_0001178
Menactra VO:0000071 Menactra http://purl.obolibrary.org/obo/VO_0000071
Meningococcal Polysaccharide Vaccine, Groups A & C, Menomune A/C VO:0010725 Meningococcal Polysaccharide Vaccine, Groups A & C, Menomune A/C http://purl.obolibrary.org/obo/VO_0010725
Menveo VO:0001246 Menveo http://purl.obolibrary.org/obo/VO_0001246
Moderna COVID-19 vaccine VO:0005157 A SARS-CoV2 RNA vaccine made of lipid nanoparticle with mRNA which encodes the S-2P antigen, made of the SARS-CoV-2 glycoprotein with a transmembrane anchor and intact S1-S2 cleavage site http://purl.obolibrary.org/obo/VO_0005157
MRKAd5 HIV-1 gag/pol/nef VO:0003133 The MRK adenovirus type 5 human immunodeficiency virus type 1 clade B gag/pol/nef vaccine is a replication-incompetent adenovirus type 5-vectored vaccine that elicits cell-mediated immunity against conserved human immunodeficiency virus proteins. http://purl.obolibrary.org/obo/VO_0003133
MVA85A VO:0003120 MVA85A http://purl.obolibrary.org/obo/VO_0003120
Mycobacterium tuberculosis NCBITaxon:1773 Mycobacterium tuberculosis http://purl.obolibrary.org/obo/NCBITaxon_1773
NVX-CoV2373 VO:0005155 A SARS-CoV 2 (rSARS-CoV-2) subunit vaccine made of nanoparticles composed of a trimeric full-length SARS-CoV-2 spike glycoprotein and Matrix-M1 adjuvant http://purl.obolibrary.org/obo/VO_0005155
Other Other Other Other
Oxford AstraZeneca COVID-19 vaccine VO:0005158 A SARS-CoV2 recombinat vector vaccine made of a chimpanzee adenovirus-vectored vaccine expressing the SARS-CoV-2 spike protein http://purl.obolibrary.org/obo/VO_0005158
P. falciparum RTS,S/AS01 VO:0003093 A malaria vaccine that consists of hepatitis B surface antigen virus-like particles, incorporating a portion of the Plasmodium falciparum-derived circumsporozoite protein and a liposome-based adjuvant. http://purl.obolibrary.org/obo/VO_0003093
Pfizer BioNTech COVID-19 vaccine VO:0004987 A SARS-CoV-2 RNA vaccine formed from a lipid nanoparticle-formulated trimerized SARS-CoV-2 receptor-binding domain http://purl.obolibrary.org/obo/VO_0004987
PfSPZ Vaccine VO:0004910 a malaria vaccine that protects against malaria caused by Plasmodium falciparum http://purl.obolibrary.org/obo/VO_0004910
PfSPZ-CVac VO:0004911 a malaria vaccine that protects against malaria caused by Plasmodium falciparum http://purl.obolibrary.org/obo/VO_0004911
PfSPZ-GA1 VO:0004912 a malaria vaccine that protects against malaria caused by Plasmodium falciparum http://purl.obolibrary.org/obo/VO_0004912
Plasmodium coatneyi NCBITaxon:208452 Found from reported data using NCBI Taxomony Dump: 208452 http://purl.obolibrary.org/obo/NCBITaxon_208452
Plasmodium cynomolgi strain B NCBITaxon:1120755 Found from reported data using NCBI Taxomony Dump: 1120755 http://purl.obolibrary.org/obo/NCBITaxon_1120755
Plasmodium cynomolgi strain Ceylon NCBITaxon:5829 Found from reported data using NCBI Taxomony Dump: 5829 http://purl.obolibrary.org/obo/NCBITaxon_5829
Plasmodium falciparum NCBITaxon:5833 malaria parasite P. falciparum http://purl.obolibrary.org/obo/NCBITaxon_5833
Plasmodium falciparum vaccine VO:0000087 a malaria vaccine that protects against malaria caused by Plasmodium falciparum. http://purl.obolibrary.org/obo/VO_0000087
Plasmodium vivax NCBITaxon:5855 Found from reported data using NCBI Taxomony Dump: 5855 http://purl.obolibrary.org/obo/NCBITaxon_5855
Pneumovax 23 VO:0000088 Pneumovax 23 http://purl.obolibrary.org/obo/VO_0000088
quadrivalent inactivated influenza vaccine VO_0010196 quadrivalent inactivated influenza vaccine https://www.ebi.ac.uk/ols4/ontologies/vo/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FVO_0010196
Respiratory syncytial virus NCBITaxon:12814 Respiratory syncytial (sin-SISH-uhl) virus, or RSV, is a common respiratory virus that usually causes mild, cold-like symptoms. Most people recover in a week or two, but RSV can be serious, especially for infants and older adults. http://purl.obolibrary.org/obo/NCBITaxon_12814
rVSV-EBOV VO:0004660 An Ebola virus vaccine that uses a recombinant vesicular stomatitis virus (rVSV) vector expressing an Ebola filovirus glycoprotein http://purl.obolibrary.org/obo/VO_0004660
SARS Coronavirus 2 B.1.1.529 UMLS_CUI:C5564753 WHO Name: Omicron. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 69/70, 143/145 and 212 and amino acid substitutions A67V, T95I, G142D, N211I, G339D, S371L, S373P, S375F, S477N, T478K, E484A, Q493R, G496S, Q498R, N501Y, Y505H, T547K, D614G, H655Y, N679K, P681H, D796Y, N856K, Q954H, N969K and L981F. (NCI) https://uts.nlm.nih.gov/uts/umls/concept/C5564753
SARS Coronavirus 2 BA.1 UMLS_CUI:C5706968 WHO Name: Omicron. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 69/70, 143/145 and 212 and amino acid substitutions A67V, T95I, G142D, N211I, G339D, S371L, S373P, S375F, S477N, T478K, E484A, Q493R, G496S, Q498R, N501Y, Y505H, T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K and L981F. (NCI). https://uts.nlm.nih.gov/uts/umls/concept/C5706968
SARS Coronavirus 2 BA.2 UMLS_CUI:C5670041 WHO Name: Omicron. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 25/27 and amino acid substitutions T19I, L24S, G142D, V213G, G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H and N969K. (NCI) https://uts.nlm.nih.gov/uts/umls/concept/C5670041
SARS Coronavirus 2 BA.3 UMLS_CUI:C5706967 WHO Name: Omicron. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 69/70, 143/145 and 212 and amino acid substitutions A67V, G142D, N211I, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H and N969K. (NCI) https://uts.nlm.nih.gov/uts/umls/concept/C5706967
SARS Coronavirus 2 BA.4 UMLS_CUI:C5706966 WHO Name: Omicron. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 25/27 and 69/70 and amino acid substitutions T19I, L24S, G142D, V213G, G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H and N969K. This variant has two novel amino acid variations, a D61L substitution in the ORF6 protein and a L11F in the ORF7b protein. (NCI) https://uts.nlm.nih.gov/uts/umls/concept/C5706966
SARS Coronavirus 2 BA.5 UMLS_CUI:C5706965 WHO Name: Omicron. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 25/27 and 69/70 and amino acid substitutions T19I, L24S, G142D, V213G, G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H and N969K. (NCI) https://uts.nlm.nih.gov/uts/umls/concept/C5706965
SARS Coronavirus 2 C.37 UMLS_CUI:C5556619 WHO Name: Lambda. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 247-253 and amino acid substitutions G75V, T76I, L452Q, F490S, D614G and T859N. (NCI) https://uts.nlm.nih.gov/uts/umls/concept/C5556619
SARS-CoV-2 NCBITaxon:2697049 Severe acute respiratory syndrome coronavirus 2, equivalent: 2019-nCoV http://purl.obolibrary.org/obo/NCBITaxon_2697049
SARS-CoV-2 B.1.1.7 variant UMLS_CUI:C5433393 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 69, 70 and 144 and amino acid substitutions N501Y, A570D, D614G, P681H, T716I, S982A and D1118H. The substitutions E484K, S494P and K1191N have also been detected in some but not all sequences for this lineage. (NCI). Also known as B.1.1.7, 20I/501Y.V1, VOC - 202012/01, and UK variant (LNC) https://uts.nlm.nih.gov/uts/umls/concept/C5433393
SARS-CoV-2 B.1.351 variant UMLS_CUI:C5433395 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: deletions of the amino acids at positions 241-242 and amino acid substitutions D80A, D215G, K417N, E484K, N501Y, D614G and A701V. (NCI). Also known as B.1.351, 501Y.V2, and South Africa variant (LNC) https://uts.nlm.nih.gov/uts/umls/concept/C5433395
SARS-CoV-2 B.1.617.2 lineage UMLS_CUI:C5548982 Also known as WHO Delta variant (LNC) https://uts.nlm.nih.gov/uts/umls/concept/C5548982
SARS-CoV-2 D614G variant UMLS_CUI:C5433391 Known as SARS-CoV-2 USA-WA1/2020. https://www.ncbi.nlm.nih.gov/biosample/SAMN18527778 https://uts.nlm.nih.gov/uts/umls/concept/C5433391
SARS-CoV-2 Mu variants UMLS_CUI:C5564751 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: an amino acid insertion 146N and amino acid substitutions T95I, Y144T, Y145S, R346K, E484K, N501Y, D614G, P681H and D950N. (NCI). Also known as SARS-CoV-2 B.1.621. https://uts.nlm.nih.gov/uts/umls/concept/C5564751
SARS-CoV-2 P.1 variant UMLS_CUI:C5433398 A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions L18F, T20N, P26S, D138Y, R190S, K417T, E484K, N501Y, D614G, H655Y, T1027I and V1176F. (NCI). Also known as SARS-CoV-2 Gamma; P.1 https://uts.nlm.nih.gov/uts/umls/concept/C5433398
SARS-CoV-2 P.2 variant UMLS_CUI:C5433392 WHO Name: Zeta. A variant lineage of SARS coronavirus 2 where the following variations in the spike glycoprotein sequence have been identified: amino acid substitutions E484K, D614G and V1176F. The substitution F565L has also been detected in some but not all sequences for this lineage. (NCI). https://uts.nlm.nih.gov/uts/umls/concept/C5433392
Schistosoma mansoni NCBITaxon:6183 Found from reported data using NCBI Taxomony Dump: 6183 http://purl.obolibrary.org/obo/NCBITaxon_6183
Shigella flexneri 2a NCBITaxon:42897 Shigella flexneri, serovar 2a. Extended spectrum beta-lactamase producing Shigella flexneri serovar 2a (133131000112102) SNOMEDCT_US http://purl.obolibrary.org/obo/NCBITaxon_42897
Shigella sonnei NCBITaxon:624 A lactose-fermenting bacterium causing dysentery http://purl.obolibrary.org/obo/NCBITaxon_624
Sinopharm (BBIBP-CorV) VO:0005166 A SARS-CoV-2 inactivated whole virus vaccine that produced in Vero cells that is developed by the Beijing Institute of Biological Products. http://purl.obolibrary.org/obo/VO_0005166
Sputnik V VO:0005163 A SARS-CoV-2 recombinant viral vector vaccine composed of Ad26 and Ad5 vectors expressing S protein that lyophilised. http://purl.obolibrary.org/obo/VO_0005163
Stamaril VO:0003139 It is live attenuated YFV vaccine strain 17D manufactured in China, France, Senegal, and the USA. In powder and solvent for suspension for injection in pre-filled syringe. http://purl.obolibrary.org/obo/VO_0003139
Staphylococcus aureus NCBITaxon:1280 Staphylococcus aureus is a Gram-positive, round-shaped bacterium that is a member of the Firmicutes, and it is a usual member of the microbiota of the body, frequently found in the upper respiratory tract and on the skin. http://purl.obolibrary.org/obo/NCBITaxon_1280
unidentified NCBITaxon:32644 Found from reported data using NCBI Taxomony Dump: 32644 http://purl.obolibrary.org/obo/NCBITaxon_32644
Vaccinia virus LC16M8 NCBITaxon:10248 Found from reported data using NCBI Taxomony Dump: 10248 http://purl.obolibrary.org/obo/NCBITaxon_10248
Varicella-zoster virus vaccine VO:0000669 a Herpesvirus vaccine that is used against Varicella-zoster virus infection. http://purl.obolibrary.org/obo/VO_0000669
West Nile virus NCBITaxon:11082 West Nile virus http://purl.obolibrary.org/obo/NCBITaxon_11082
Yellow fever 17D vaccine vector VO:0000122 a viral vaccine vector that uses Yellow fever vaccine strain 17D as the vector. http://purl.obolibrary.org/obo/VO_0000122
YF-Vax VO:0000121 YF-Vax http://purl.obolibrary.org/obo/VO_0000121
Zika virus NCBITaxon:64320 Found from reported data using NCBI Taxomony Dump: 64320 http://purl.obolibrary.org/obo/NCBITaxon_64320
Zostavax VO:0000124 Zostavax http://purl.obolibrary.org/obo/VO_0000124