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DR63 DataRelease

Release Date: April 2026
New Studies: 28
Updated Studies: 3

New Studies

SDY1058: H5N1 Vaccine with and without AS03 adjuvant
Status: New
Description: Single site, Phase II randomized (2:1) double blinded study in which adult healthy subjects will receive 2 intramuscular doses of Influenza A (H5N1) Virus Monovalent Vaccine with AS03 adjuvant or Influenza A (H5N1) Virus Monovalent Vaccine without AS03 adjuvant given 21 days (+/- 3 days) apart.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-15-041 Systems Biological Analysis of Innate and Adaptive Responses to Vaccination (Emory)
DOI: 10.21430/M3ZJTOHS45
Subjects: 50
Study PI, contact:
NameOrganizationSite
Nadine Rouphael Emory University Hope Clinic
Mark Mulligan Emory University Hope Clinic
Aneesh Mehta Emory University Hope Clinic
Srilatha Edugupanti Emory University Hope Clinic
Colleen Kelley Emory University Hope Clinic
Allison Beck Emory University Hope Clinic
Publications:None
Resources:
clinicaltrials.gov https://clinicaltrials.gov/ct2/show/NCT01910519]
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 0
ELISPOT 276
Flow Cytometry 0
Hemagglutination Inhibition 190
Luminex xMAP 487
Neutralizing Antibody Titer Assay 950
Other 0
Surface Plasmon Resonance 760
Transcription profiling by array 384
Clinical Assessments:None

SDY1854: GI-ARS Efficacy study (180 Days) of Subcutaneous Filgrastim (PBI/BM5) in Rhesus Macaques after Partial Body Irradiation
Status: New
Description:

Rhesus macaques were exposed to partial-body irradiation with 5% bone marrow sparing to assess the effect of Neupogen (filgrastim, granulocyte colony stimulating factor [G-CSF]) to mitigate the associated myelosuppression when administered at 24, 72, or 120 hourse post irradiation. A secondary objective was to assess the effect of Neupogen on the mortality or morbidity of the hematopoietic (H)- acute radiation syndrome (ARS) and concomitant acute gastrointestinal radiation syndrome (GI-ARS), prolonged GI injury, acute and chronic kidney injury (AKI, CKI respectively) and delayed lung injury characteristic of delayed effects of acute radiation exposure (DEARE). NHP were exposed to 10 (N=20 males) or 11 Gy (N=28 males) with 6 MV LINAC-derived photons at approximately 0.80 Gy/min. All NHP received medical management. NHP were dosed daily with control article (5% dextrose in water) initiated on day 1 post-exposure or Neupogen (10 ug/kg) initiated on day 1, day 3, or day 5 until recovery (absolute neutrophil count [ANC] >= 1,000 cells/uL for 3 consecutive days). Keywords: rhesus macaques, Macaca mulatta, radiation, natural history, radiation sickness, hematopoietic, gastrointestinal, lung, hematology, metabolomics, histology, filgrastim, RNCP

Program/Contract:
ProgramContract
Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services Contract Opportunity for Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services
DOI: 10.21430/M3ZE7NMJN9
Subjects: 48
Study PI, contact:
NameOrganizationSite
Thomas MacVittie University of Maryland, School of Medicine University of Maryland, School of Medicine
Publications:
Immune cell reconstitution after exposure to potentially lethal doses of radiation in the nonhuman primate.. Health physics Jan 2014. doi: 10.1097/HP.0b013e3182a2a9b2 [Pubmed: 24276552]
Linking the human response to unplanned radiation and treatment to the nonhuman primate response to controlled radiation and treatment.. Health physics Jan 2014. doi: 10.1097/HP.0b013e3182a12de0 [Pubmed: 24276556]
Increased Expression of Connective Tissue Growth Factor (CTGF) in Multiple Organs After Exposure of Non-Human Primates (NHP) to Lethal Doses of Radiation.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000343 [Pubmed: 26425899]
The Effect of Radiation Dose and Variation in NeupogenR Initiation Schedule on the Mitigation of Myelosuppression during the Concomitant GI-ARS and H-ARS in a Nonhuman Primate Model of High-dose Exposure with Marrow Sparing.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000350 [Pubmed: 26425903]
Citrulline as a Biomarker in the Non-human Primate Total- and Partial-body Irradiation Models: Correlation of Circulating Citrulline to Acute and Prolonged Gastrointestinal Injury.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000347 [Pubmed: 26425904]
Comparing the Hematopoetic Syndrome Time Course in the NHP Animal Model to Radiation Accident Cases From the Database Search.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000355 [Pubmed: 26425908]
Acute and Chronic Kidney Injury in a Non-Human Primate Model of Partial-Body Irradiation with Bone Marrow Sparing.. Radiation research Dec 2017. doi: 10.1667/RR24857.1 [Pubmed: 29035153]
Radiation Nephropathy in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing-Part 1: Acute and Chronic Kidney Injury and the Influence of Neupogen.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000960 [Pubmed: 30608245]
Radiation Nephropathy in a Nonhuman Primate Model of Partial-Body Irradiation With Minimal Bone Marrow Sparing-Part 2: Histopathology, Mediators, and Mechanisms.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000935 [Pubmed: 30624348]
The Time Course of Radiation-induced Lung Injury in a Nonhuman Primate Model of Partial-body Irradiation With Minimal Bone Marrow Sparing: Clinical and Radiographic Evidence and the Effect of Neupogen Administration.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000968 [Pubmed: 30624350]
The Gastrointestinal Subsyndrome of the Acute Radiation Syndrome in Rhesus Macaques: A Systematic Review of the Lethal Dose-response Relationship With and Without Medical Management.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000903 [Pubmed: 30624353]
Histopathological Features of the Development of Intestine and Mesenteric Lymph Node Injury in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000932 [Pubmed: 30624355]
Characterizing the Natural History of Acute Radiation Syndrome of the Gastrointestinal Tract: Combining High Mass and Spatial Resolution Using MALDI-FTICR-MSI.. Health physics Apr 2019. doi: 10.1097/HP.0000000000000948 [Pubmed: 30681424]
Lung and Heart Injury in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing: Histopathological Evidence of Lung and Heart Injury.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000936 [Pubmed: 30688698]
MALDI-MSI spatially maps N-glycan alterations to histologically distinct pulmonary pathologies following irradiation.. Scientific reports Jul 2020. doi: 10.1038/s41598-020-68508-y [Pubmed: 32665567]
Lack of Cellular Inflammation in a Non-human Primate Model of Radiation Nephropathy.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001329 [Pubmed: 32941291]
Acute Radiation-induced Lung Injury in the Non-human Primate: A Review and Comparison of Mortality and Co-morbidities Using Models of Partial-body Irradiation with Marginal Bone Marrow Sparing and Whole Thorax Lung Irradiation.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001346 [Pubmed: 33009295]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Microscopy 3162
Clinical Assessments:None

SDY1997: GI-ARS and H-ARS Dose-Response Relationship in Rhesus Macaques after Partial Body Irradiation
Status: New
Description:

The primary objective of this study is to determine the 60 day survival of rhesus macaques after irradiation to an approximate LD50/8-10 with tibial shielding and receiving medical management. These data were used to determine whether approximately 5% marrow sparing will allow spontaneous regeneration of the hematopoietic system subsequent to an otherwise supra-lethal dose of total-body irradiation and recovery from the acute GI radiation syndrome (GI-ARS). This model formed part of an non-human primate research platform used in subsequent studies to examine the effects of radiomitigating drugs on long-term survival of rhesus macaques after irradiation at the LD50/8-10 to induce GI syndrome with minimal marrow shielding and medical management. Animals were evaluated to Day 60 to evaluate the heme and GI syndromes and up to approximately Day 180 to evaluate the delayed effects of acute radiation exposure (DEARE). rhesus macaques, Macaca mulatta, radiation, natural history, radiation sickness, hematopoietic, gastrointestinal, lung, hematology, histology, metabolomics, RNCP

Program/Contract:
ProgramContract
Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services Contract Opportunity for Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services
DOI: 10.21430/M3RNEV8J4M
Subjects: 58
Study PI, contact:
NameOrganizationSite
Thomas MacVittie University of Maryland School of Medicine University of Maryland School of Medicine
Publications:
Immune cell reconstitution after exposure to potentially lethal doses of radiation in the nonhuman primate.. Health physics Jan 2014. doi: 10.1097/HP.0b013e3182a2a9b2 [Pubmed: 24276552]
Linking the human response to unplanned radiation and treatment to the nonhuman primate response to controlled radiation and treatment.. Health physics Jan 2014. doi: 10.1097/HP.0b013e3182a12de0 [Pubmed: 24276556]
Increased Expression of Connective Tissue Growth Factor (CTGF) in Multiple Organs After Exposure of Non-Human Primates (NHP) to Lethal Doses of Radiation.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000343 [Pubmed: 26425899]
The Effect of Radiation Dose and Variation in NeupogenR Initiation Schedule on the Mitigation of Myelosuppression during the Concomitant GI-ARS and H-ARS in a Nonhuman Primate Model of High-dose Exposure with Marrow Sparing.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000350 [Pubmed: 26425903]
Citrulline as a Biomarker in the Non-human Primate Total- and Partial-body Irradiation Models: Correlation of Circulating Citrulline to Acute and Prolonged Gastrointestinal Injury.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000347 [Pubmed: 26425904]
Comparing the Hematopoetic Syndrome Time Course in the NHP Animal Model to Radiation Accident Cases From the Database Search.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000355 [Pubmed: 26425908]
Acute and Chronic Kidney Injury in a Non-Human Primate Model of Partial-Body Irradiation with Bone Marrow Sparing.. Radiation research Dec 2017. doi: 10.1667/RR24857.1 [Pubmed: 29035153]
Radiation Nephropathy in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing-Part 1: Acute and Chronic Kidney Injury and the Influence of Neupogen.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000960 [Pubmed: 30608245]
Radiation Nephropathy in a Nonhuman Primate Model of Partial-Body Irradiation With Minimal Bone Marrow Sparing-Part 2: Histopathology, Mediators, and Mechanisms.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000935 [Pubmed: 30624348]
The Time Course of Radiation-induced Lung Injury in a Nonhuman Primate Model of Partial-body Irradiation With Minimal Bone Marrow Sparing: Clinical and Radiographic Evidence and the Effect of Neupogen Administration.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000968 [Pubmed: 30624350]
The Gastrointestinal Subsyndrome of the Acute Radiation Syndrome in Rhesus Macaques: A Systematic Review of the Lethal Dose-response Relationship With and Without Medical Management.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000903 [Pubmed: 30624353]
Histopathological Features of the Development of Intestine and Mesenteric Lymph Node Injury in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000932 [Pubmed: 30624355]
Characterizing the Natural History of Acute Radiation Syndrome of the Gastrointestinal Tract: Combining High Mass and Spatial Resolution Using MALDI-FTICR-MSI.. Health physics Apr 2019. doi: 10.1097/HP.0000000000000948 [Pubmed: 30681424]
Lung and Heart Injury in a Nonhuman Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing: Histopathological Evidence of Lung and Heart Injury.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000936 [Pubmed: 30688698]
MALDI-MSI spatially maps N-glycan alterations to histologically distinct pulmonary pathologies following irradiation.. Scientific reports Jul 2020. doi: 10.1038/s41598-020-68508-y [Pubmed: 32665567]
Lack of Cellular Inflammation in a Non-human Primate Model of Radiation Nephropathy.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001329 [Pubmed: 32941291]
Acute Radiation-induced Lung Injury in the Non-human Primate: A Review and Comparison of Mortality and Co-morbidities Using Models of Partial-body Irradiation with Marginal Bone Marrow Sparing and Whole Thorax Lung Irradiation.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001346 [Pubmed: 33009295]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Microscopy 3979
Clinical Assessments:None

SDY2002: Natural History of the Gastrointestinal Acute Radiation Syndrome (GI-ARS) in Rhesus Macaques Following Partial Body Irradiation (2.5% Bone Marrow Sparing)
Status: New
Description:

A nonhuman primate model of acute, partial-body, high dose, irradiation (6 megavolt linear accelerator-derived photons delivered at 0.80 Gy minute-1) with 2.5% bone marrow sparing was used to assess the severity and natural history of the acute GI-ARS and associated, concurrent H-ARS and AKI consequent to 12 Gy irradiation. The primary endpoint was survival and secondary objectives focused on a) natural history components and morbidity of GI-ARS (d1-30 post exposure), b) acute kidney injury (AKI, d1-30+ post exposure), c) available database for lung and heart, d) organ-specific biomarkers: plasma- and tissue-based biomarkers for radiation dose and multi-organ injury. Assess the ability to predict DEARE (lung, heart, prolonged GI, kidney). All animals received subject-based medical management. rhesus macaques, Macaca mulatta, radiation, natural history, radiation sickness, hematopoietic, gastrointestinal, lung, hematology, histology, metabolomics, proteomics, lipidomics, bile acid, RNCP

Program/Contract:
ProgramContract
Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services Contract Opportunity for Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services
DOI: 10.21430/M3TQH2ZN7E
Subjects: 42
Study PI, contact:
NameOrganizationSite
Thomas MacVittie University of Maryland School of Medicine University of Maryland School of Medicine
Publications:
Characterizing the Natural History of Acute Radiation Syndrome of the Gastrointestinal Tract: Combining High Mass and Spatial Resolution Using MALDI-FTICR-MSI.. Health physics Apr 2019. doi: 10.1097/HP.0000000000000948 [Pubmed: 30681424]
Evaluation of Plasma Biomarker Utility for the Gastrointestinal Acute Radiation Syndrome in Non-human Primates after Partial Body Irradiation with Minimal Bone Marrow Sparing through Correlation with Tissue and Histological Analyses.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001348 [Pubmed: 32947487]
Proteomics of Non-human Primate Plasma after Partial-body Radiation with Minimal Bone Marrow Sparing.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001350 [Pubmed: 32947488]
Proteomic Evaluation of the Natural History of the Acute Radiation Syndrome of the Gastrointestinal Tract in a Non-human Primate Model of Partial-body Irradiation with Minimal Bone Marrow Sparing Includes Dysregulation of the Retinoid Pathway.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001351 [Pubmed: 32947489]
Acute Proteomic Changes in Non-human Primate Kidney after Partial-body Radiation with Minimal Bone Marrow Sparing.. Health physics Oct 2021. doi: 10.1097/HP.0000000000001475 [Pubmed: 34546216]
Acute Proteomic Changes in Lung after Radiation: Toward Identifying Initiating Events of Delayed Effects of Acute Radiation Exposure in Non-human Primate after Partial Body Irradiation with Minimal Bone Marrow Sparing.. Health physics Oct 2021. doi: 10.1097/HP.0000000000001476 [Pubmed: 34546219]
Metabolomics of Multiorgan Radiation Injury in Non-human Primate Model Reveals System-wide Metabolic Perturbations.. Health physics Oct 2021. doi: 10.1097/HP.0000000000001472 [Pubmed: 34546220]
Effect of Radiation on the Essential Nutrient Homeostasis and Signaling of Retinoids in a Non-human Primate Model with Minimal Bone Marrow Sparing.. Health physics Oct 2021. doi: 10.1097/HP.0000000000001477 [Pubmed: 34546221]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Microscopy 2302
Clinical Assessments:None

SDY2058: GI-ARS Efficacy study (180 Days) of Subcutaneous Filgrastim or Pegfilgrastim in Rhesus Macaques after Partial Body Irradiation (PBI/BM2.5)
Status: New
Description:

Rhesus macaques were exposed to partial-body irradiation with 2.5% bone marrow sparing to assess the effect of Neupogen (filgrastim, granulocyte colony stimulating factor [G-CSF]) or Neulasta (pegfilgrastim, pegG-CSF) to mitigate the associated myelosuppression when administered at 24 or 72 hours post irradiation. A secondary objective was to assess the effect of Neupogen or Neulasta on the mortality or morbidity of the hematopoietic (H)- acute radiation syndrome (ARS) and concomitant acute gastrointestinal radiation syndrome (GI-ARS), prolonged GI injury, acute and chronic kidney injury (AKI, CKI respectively) and delayed lung injury characteristic of delayed effects of acute radiation exposure (DEARE). NHP were exposed to 10 Gy with 6 MV LINAC-derived photons at approximately 0.80 Gy/min. All NHP received medical management. NHP were dosed daily or weekly with control article (5% dextrose in water, or D5W), daily with Neupogen, or weekly with Neulasta. D5W was initiated on day 1 post-exposure. Neupogen (10 ug/kg) administration was initiated on days 1 or 3 post-exposure until recovery (absolute neutrophil count [ANC] >= 1,000 cells/uL for 3 consecutive days). Neulasta (300 ug/kg) administration was initiated on day 1 (days 1, 8, 15) or day 3 (days 3, 11, 17). Keywords: rhesus macaques, Macaca mulatta, radiation, natural history, radiation sickness, hematopoietic, gastrointestinal, lung, hematology, metabolomics, filgrastim, pegfilgrastim, RNCP

Program/Contract:
ProgramContract
Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services Contract Opportunity for Radiation/Nuclear Medical Countermeasure (MCM) Product Development Support Services
DOI: 10.21430/M3CXBS8APJ
Subjects: 44
Study PI, contact:
NameOrganizationSite
Thomas MacVittie University of Maryland School of Medicine University of Maryland School of Medicine
Publications:
The Evolving Mcart Multimodal Imaging Core: Establishing a Protocol for Computed Tomography and Echocardiography in the Rhesus Macaque to Perform Longitudinal Analysis of Radiation-Induced Organ Injury.. Health physics Nov 2015. doi: 10.1097/HP.0000000000000344 [Pubmed: 26425907]
Organ Doses Associated with Partial-Body Irradiation with 2.5% Bone Marrow Sparing of the Non-Human Primate: A Retrospective Study.. Radiation research Dec 2017. doi: 10.1667/RR14804.1 [Pubmed: 28985133]
Efficacy of Neulasta or Neupogen on H-ARS and GI-ARS Mortality and Hematopoietic Recovery in Nonhuman Primates After 10-Gy Irradiation With 2.5% Bone Marrow Sparing.. Health physics Mar 2019. doi: 10.1097/HP.0000000000000878 [Pubmed: 30281533]
Lack of Cellular Inflammation in a Non-human Primate Model of Radiation Nephropathy.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001329 [Pubmed: 32941291]
Evaluation of Plasma Biomarker Utility for the Gastrointestinal Acute Radiation Syndrome in Non-human Primates after Partial Body Irradiation with Minimal Bone Marrow Sparing through Correlation with Tissue and Histological Analyses.. Health physics Nov 2020. doi: 10.1097/HP.0000000000001348 [Pubmed: 32947487]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Microscopy 3531
Clinical Assessments:None

SDY2770: A systems immunology study comparing innate and adaptive immune responses in adults to COVID-19 mRNA and adenovirus vectored vaccines
Status: New
Description: longitudinally profile innate and adaptive immune responses in 102 adults after the first, second, and third doses of mRNA or adenovirus-vectored COVID-19 vaccines
Program/Contract:
ProgramContract
DOI: None
Subjects: 103
Study PI, contact:
NameOrganizationSite
David Lynn Flinders University NA
Publications:
A systems immunology study comparing innate and adaptive immune responses in adults to COVID-19 mRNA and adenovirus vectored vaccines. Cell Reports Medicine March 2023. doi: 10.1016/j.xcrm.2023.100971 [Pubmed: 36871558]
Resources:
GSE199750 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE199750]
Assays:
Assay TypeNumber of Exp. Samples
ELISA 682
Pseudovirus Neutralization Assay 341
RNA sequencing 260
Clinical Assessments:None

SDY2913: Maternal proteome profiling reveals dynamic gestational age-specific responses to de novo vaccination|
Status: New
Description: Use of COVID-19 mRNA vaccines in pregnant individuals presents a unique opportunity to define baseline trimester-specific immunoproteomic signatures, and to examine how de novo vaccines might perturb these signatures across trimesters (TMs).
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-20-079 Research Project 1 - The pregnancy ImmunOME
DOI: 10.21430/M334S78YNW
Subjects: 294
Study PI, contact:
NameOrganizationSite
Andrea Edlow Massachusetts General Hospital Massachusetts General Hospital
Douglas A. Lauffenburger The Ragon Institute of MGH, MIT and Harvard, Cambridge The Ragon Institute of MGH, MIT and Harvard, Cambridge
Publications:
Maternal proteome profiling reveals dynamic gestational age-specific responses to de novo vaccination. The Journal of Immunology 12 2025. doi: 10.1093/jimmun/vkaf298 [Pubmed: 41384839]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Other 512
Clinical Assessments:None

SDY3121: AD Phenotypes
Status: New
Description: This is a longitudinal study that pooled data from 5314 children (48.6% female; 20.4% Black, 62.9% White, 6.7% other races, 10.1% unknown) in 12 birth cohorts throughout the United States across decades (1980s-2022). Two thirds of cohorts were population-based, and 1/3 required a family history of atopy. Participants were enrolled prenatally and were geographically, racially, ethnically, and socio-economically diverse. The objective was to determine phenotypes of atopic dermatitis (AD) expression and identify factors associated with phenotype and development of allergic diseases. Five phenotypes were identified: minimal/no AD, transient early AD expression, early AD with potential recurrence, persistent AD, later AD.
Program/Contract:
ProgramContract
NIH Program Interactions between RV-C and its receptor CDHR3 in the development of chronic rhinosinusitis
DOI: 10.21430/M3KH6O4AUW
Subjects: 0
Study PI, contact:
NameOrganizationSite
Anne Marie Singh University of Wisconsin Madison UW Madison
Publications:
Phenotypes of Atopic Dermatitis and Development of Allergic Diseases. JAMA Network Open June 2025. doi: None [Pubmed: 40504529]
Resources:
Assays:None
Clinical Assessments:None

SDY3452: Porcine 4h and 72h Lung Ischemia Reperfusion Injury Models - Flow Cytometry
Status: New
Description: Pulmonary ischemia-reperfusion injury (IRI) is a major risk-factor for primary graft dysfunction, the clinical manifestation of acute lung injury early after transplantation. IRI causes an acute inflammatory response in which both the innate and adaptive immune systems are substantially activated. In vitro studies and rodent models have explored the immune response, yet this has not been investigated in porcine models. Humans share more immune-related genes and immune cell functionalities with pigs compared to rodents. We hypothesized that we would be able to observe similar processes in a porcine model of lung transplantation with prolonged graft storage to induce IRI. To do this, we used two porcine lung transplant models: a 4 h reperfusion and 72 h survival model which emulates the development of PGD and assessed changes in intra-graft immune cell numbers and their activation. Orthotopic left single-lung transplantations were performed with donor lungs undergoing 24 h cold ischemic time. Recipient operation was performed on two experimental groups: 4 h of reperfusion before sacrifice (n=7) and 72 h of survival before sacrifice (n=6). These groups were compared to porcine lungs without lung injury (n=6). Lung samples were collected and dissociated into single cell suspensions and cryopreserved. All cells were thawed and stained with four separate flow panels focused on: myeloid cells, dendritic cells, T cells and B cells. Stained cells were analyzed using a BD LSR II flow cytometer. Within the first 4 h after porcine lung reperfusion, a significant increase neutrophils and monocytes was observed, which is presumed to be an influx from the peripheral immune system based on the rapidity of the increase. A transient CD4+ T cell response was also observed within 4 h post-reperfusion. Following 72 hours, there was a significant increase in CD163+ monocytes and DCs, indicating a maturing inflammatory response.
Program/Contract:
ProgramContract
Other Programs Porcine 4h and 72h Lung Ischemia Reperfusion Injury Models - Flow Cytometry
DOI: 10.21430/M31TEVYQEL
Subjects: 32
Study PI, contact:
NameOrganizationSite
Allen Duong University Health Network University Health Network
Tereza Martinu University Health Network University Health Network
Stephen Juvet University Health Network University Health Network
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Flow Cytometry 76
Clinical Assessments:None

SDY3461: Increasing scalability of single-cell sample processing using Seq-Well S3
Status: New
Description: In-depth analyses of clinical samples have the potential to provide unparalleled insights into the cellular mechanisms that underlie both health and disease, as well as therapeutic and prophylactic responses. However, these specimens are often paucicellular, necessitating the use of workflows that maximize the amount of information that can be learned. Here, we provide a detailed protocol for generating and analyzing single-cell multi-omic data from low-input samples with the Seq-Well S3 platform. We further describe a matched pipeline for sample hashing that reduces costs and sources of technical variation in the resulting data while also enhancing throughput. In brief, our streamlined and efficient methodology involves: (1) optionally staining single-cell suspensions with antibody-oligonucleotide conjugates for cell surface protein quantification and/or sample multiplexing; (2) generating Seq-Well S3 sequencing libraries; (3) optionally producing bulk-RNA sequencing libraries via SMART-seq2 to support genetic demultiplexing; and, (4) computationally analyzing the resulting data. Each step herein has been designed to leverage readily available reagents and standard laboratory equipment, significantly lowering barriers to entry for researchers. The overall protocol can yield high-quality multi-omic insights from samples in under a week.
Program/Contract:
ProgramContract
NIH Program Maternal Omics to Maximize Immunity
DOI: 10.21430/M35I93AMFS
Subjects: 4
Study PI, contact:
NameOrganizationSite
Daniela Dolores Russo MIT/Ragon Institute MIT/Ragon Institute
Publications:
A scalable, low-cost, sample hashing workflow for multiomic single-cell analysis using the Seq-Well S3 platform. Nature Protocols March 2026. doi: 10.1038/s41596-025-01308-8 [Pubmed: 41792497]
Resources:
GEO_submission https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE266385]
Assays:
Assay TypeNumber of Exp. Samples
Bulk RNA-seq assay 3
CITE-Seq 12
scRNA-seq 6
Clinical Assessments:None

SDY3463: Tasso_abcd_flow_cytometry
Status: New
Description: Here we enrolled 16 healthy research participants where on the same day they had their blood drawn by a professional at the center via venipuncture (gold standard), drew their blood themselves using a Tasso+ device (herein referred to as an at home blood collection device) under supervision at the center, and drew their blood themselves using a Tasso+ device at home and then mailed to the center at ambient temperatures. In addition to testing for differences from these different collection procedures, we also tested for differences from blood processing procedures; ACK lysis only vs PBMC generation by ficoll density gradient. All sample were analyzed by flow cytometry using 2, 28 color panels that described the T cell and antigen presenting cell compartments.
Program/Contract:
ProgramContract
NIH Program Inflammation-driven T Cell Responses and their Dichotomous Effect on Host Immunity
NIH Program Metabolite- and cytokine-mediated signals interact to control human CD8 T cell responses in tissues
NIH Program The role of tissue-resident T cells in resolving inflammation of the human oral mucosa
DOI: 10.21430/M3O1IOFAMM
Subjects: 16
Study PI, contact:
NameOrganizationSite
Andrew Konecny Fred Hutchinson Cancer Center Fred Hutchinson Cancer Center
Martin Prlic Fred Hutchinson Cancer Institute Fred Hutchinson Cancer Center
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Flow Cytometry 128
Clinical Assessments:None

SDY3468: Structure and function of a cross-neutralizing influenza neuraminidase antibody that accommodates recent N2 NA Asn245 glycosylation
Status: New
Description: The authors further characterize the monoclonal antibody 1122A11.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M3IP3NT5YP
Subjects: 1
Study PI, contact:
NameOrganizationSite
Ian Wilson The Scripps Research Institute The Scripps Research Institute, Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
Publications:
Structure and function of a cross-neutralizing influenza neuraminidase antibody that accommodates recent N2 NA Asn245 glycosylation. Commun Biol. Oct 2025. doi: 10.1038/s42003-025-08830-1 [Pubmed: 41053391]
Resources:
Assays:None
Clinical Assessments:None

SDY3469: Stabilized mosaic hemagglutinin immunogens as novel universal influenza virus vaccines
Status: New
Description: The authors developed a novel vaccination strategy based on recombinant mosaic HAs that are stabilized without a foldon
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M3CAJS67XN
Subjects: 0
Study PI, contact:
NameOrganizationSite
Irene Gonzalez-Dominguez Icahn School of Medicine at Mount Sinai ISMM_SEM-CIVIC
Peter Palese Icahn School of Medicine at Mount Sinai ISMM_SEM-CIVIC
Publications:
None. None None None. doi: None [Pubmed: Not Applicable]
Resources:
Assays:None
Clinical Assessments:None

SDY3471: Defining the antigenic and molecular determinants for Chlamydia vaccine-elicited protection
Status: New
Description: The proposed study focuses on developing a novel bivalent vaccine to combat Chlamydia trachomatis (CT), a leading sexually transmitted bacterial infection which can spread to the upper genital tract of women and cause pelvic inflammatory disease, infertility, and chronic pelvic pain. No FDA-approved vaccines exist for CT, and due to its largely asymptomatic nature, many infections go undetected and untreated, increasing prevalence and risk for sequelae. This project builds on promising preliminary findings using a vaccine formulation combining Chlamydial Protease Activity Factor (CPAF), a conserved and immunodominant antigen, with a Stimulator of Interferon Genes (STING) agonist, ADU-S100, in murine models. This vaccine elicited robust CD4 T cell responses and significantly reduced bacterial burden but fell short in preventing oviduct pathology. To enhance efficacy, the study proposes a bivalent vaccine incorporating CPAF and the chlamydial Major Outer Membrane Protein (MOMP), a key target for opsonizing antibodies, conjugated with a novel STING agonist (STG1151) via click-chemistry. The central hypothesis posits that the bivalent vaccine will generate synergistic Th1 immunity and antibody responses critical for reducing bacterial load and preventing pathology. Specific aims include: (1) Determining whether a bivalent STG1151-conjugated vaccine improves protection over monovalent CPAF-STG1151, and elucidating the contribution of CD4 T cells and opsonizing antibody to protection. (2) Determine the downstream molecular mechanisms induced by the STING adjuvant, STG1151, in protection, including assessment of the roles of TNFα and type I interferon signaling. Experimental methods involve priming and boosting mice with various vaccine formulations, monitoring bacterial burden, and evaluating immunological responses via ELISpot and intracellular cytokine assays. Findings aim to clarify mechanisms of vaccine-induced immunity and establish a foundation for advancing a protective CT vaccine. This work addresses critical gaps in CT vaccine development and holds potential to mitigate the global burden of chlamydial infections.
Program/Contract:
ProgramContract
NIH Program Determining the efficacy and protective mechanism of a bivalent Chlamydia vaccine
DOI: 10.21430/M3YV8UHW9M
Subjects: 69
Study PI, contact:
NameOrganizationSite
Ashley Polson University of North Carolina at Chapel Hill University of North Carolina at Chapel Hill
Toni Darville University of North Carolina at Chapel Hill University of North Carolina at Chapel Hill
Taylor Poston University of North Carolina at Chapel Hill University of North Carolina at Chapel Hill
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
ELISA 94
ELISPOT 106
Intracellular Cytokine Stain Flow Cytometric Assay 57
Clinical Assessments:None

SDY3473: Influenza B mosaic HA mRNA-LNP vaccines are cross-reactive and protective in mice
Status: New
Description: The authors assessed the immunogenicity of cHA and mHA vaccines delivered via the nucleoside-modified mRNA-lipid nanoparticle platform
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M335GYYCLX
Subjects: 0
Study PI, contact:
NameOrganizationSite
Peter Palese Icahn School of Medicine at Mount Sinai ISMM_SEM-CIVIC
Weina Sun Icahn School of Medicine at Mount Sinai ISMM_SEM-CIVIC
Publications:
None. None None None. doi: None [Pubmed: Not Applicable]
Resources:
Assays:None
Clinical Assessments:None

SDY3474: Antibody responses to SARS-CoV-2 variants LP.8.1, LF.7.1, NB.1.8.1, XFG and BA.3.2 following KP.2 monovalent mRNA vaccination
Status: New
Description: The authors assessed neutralizing antibody responses in 56 adults with varied exposure histories following KP.2 vaccination against emerging variants including LP.8.1, LF.7.1, NB.1.8.1, XFG, and BA.3.2
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M3FZONB5S7
Subjects: 0
Study PI, contact:
NameOrganizationSite
Florian Krammer Icahn School of Medicine at Mount Sinai ISMM_SEM-CIVIC
Viviana Simon Icahn School of Medicine at Mount Sinai ISMM_SEM-CIVIC
Publications:
Antibody responses to SARS-CoV-2 variants LP.8.1, LF.7.1, NB.1.8.1, XFG and BA.3.2 following KP.2 monovalent mRNA vaccination. medRxiv Sep 2025. doi: 10.1101/2025.08.24.25333689 [Pubmed: 40909860]
Resources:
Not Applicable https://journals.asm.org/doi/10.1128/mbio.02901-25]
Assays:None
Clinical Assessments:None

SDY3475: Genomic resources and assays for hamster repertoire profiling
Status: New
Description: Immune repertoire research in hamsters is currently restricted because their B cell and T cell receptor genomic regions have not been fully characterized. To address this gap and begin creating reference resources for hamster immunoglobulin (IG) and T cell receptor (TR) genes, long read transcriptome sequencing across six different tissue types were conducted. These improved resources and assays will enable future studies to more comprehensively characterize the diversity of the hamster immune repertoire.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M30B1CH4JH
Subjects: 10
Study PI, contact:
NameOrganizationSite
Nicole Adams University of Georgia NCSU_CIVR-HRP
Xinxia Peng Other: North Carolina State University NCSU_CIVR-HRP
Publications:
Development of genomic resources and assays for immune repertoire profiling in Syrian hamsters. J Immunol. Mar 2026. doi: 10.1093/jimmun/vkag022 [Pubmed: 41854270]
Resources:
NCBI.gov https://www.ncbi.nlm.nih.gov/]
Assays:
Assay TypeNumber of Exp. Samples
RNA sequencing 6
Clinical Assessments:None

SDY3476: Light chain biases and kinetics following influenza virus infections in ferrets
Status: New
Description: The kinetic profile of the hemagglutinin-specific antibody responses were tracked for 72 days after a primary infection with an influenza A or B virus and 14 days after a secondary infection with H1N1 influenza A virus. The HA binding of the serum antibodies and the number of HA-specific antibody-secreting cells from the peripheral mononuclear cells, spleens, and mediastinal lymph nodes were tested at multiple timepoints post-infection. The HA-specific immunoglobulin lambda light chain and kappa light chain frequencies were observed after primary or secondary influenza virus infection. Taken together, there are specific dominant anti-HA Ig light chain frequencies expressed following influenza A primary versus secondary virus infection that result in specific antibody activity.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3M9CA0DEP
Subjects: 0
Study PI, contact:
NameOrganizationSite
Giuseppe Sautto Other: Cleveland Clinic CLVC_CIVR-HRP
Robert Richardson University of Georgia CLVC_CIVR-HRP
Ted Ross Other: Cleveland Clinic CLVC_CIVR-HRP
Publications:
Delineation of the antibody light chain biases and kinetics following primary and secondary influenza virus infections of ferrets. Immunohorizons Jan 2026. doi: 10.1093/immhor/vlaf085 [Pubmed: 41598984]
Resources:
Assays:None
Clinical Assessments:None

SDY3486: Intranasal hemagglutinin protein boosters induce protective mucosal immunity against influenza A viruses in mice
Status: New
Description: The authors describe an intranasal booster strategy with unadjuvanted recombinant hemagglutinin following initial messenger RNA-lipid nanoparticle vaccination.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M3IWXPD4JK
Subjects: 0
Study PI, contact:
NameOrganizationSite
Akiko Iwasaki Yale School of Medicine Yale School of Medicine, Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
Publications:
Intranasal hemagglutinin protein boosters induce protective mucosal immunity against influenza A viruses in mice. Proc Natl Acad Sci U S A Sep 2025. doi: 10.1073/pnas.2422171122 [Pubmed: 40991437]
Resources:
Assays:None
Clinical Assessments:None

SDY3488: H3 HA proteins elicit antibodies against panels of influenza A (H3N2) viruses
Status: New
Description: In this study, five computationally optimized broadly reactive antigens (COBRAs) from influenza A(H3N2) viruses that circulated during 2018 to 2022 were designed to address vaccine effectiveness and mismatches between vaccines and currently circulating viruses. These COBRA HA proteins, NG4 - NG8, were expressed as rHA protein and assessed for their antigenic diversity using mouse and ferret models. Naive and pre-immune mice were vaccinated intramuscularly with COBRA rHA mixed with Infectimune. Ferrets were pre-immunized and vaccinated intramuscularly in a prime-boost regimen with various COBRA rHA vaccines adjuvanted with Infectimune. Samples were collected at various time points, and the immune response was assessed through HAI, microneutralization, and plaque assays.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3SNFOU042
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ted Ross Other: Cleveland Clinic CLVC_CIVR-HRP
James Allen Other: Cleveland Clinic CLVC_CIVR-HRP
Matthew Thomas Other: Cleveland Clinic CLVC_CIVR-HRP
Amanda Lynch Other: Cleveland Clinic CLVC_CIVR-HRP
Jessica Medina Other: Cleveland Clinic CLVC_CIVR-HRP
Publications:
H3 hemagglutinin proteins optimized for 2018 to 2022 elicit neutralizing antibodies across panels of modern influenza A(H3N2) viruses. J Immunol. Jul 2025. doi: 10.1093/jimmun/vkaf092 [Pubmed: 40400055]
Resources:
PubMed link https://pubmed.ncbi.nlm.nih.gov/40400055/]
Assays:None
Clinical Assessments:None

SDY3491: Influenza Vaccine Cannot Trigger a Titer Increase Among Elderly Individuals
Status: New
Description: Exploration of heterogeneity in the absence of response to the influenza vaccine in the elderly. This longitudinal study involved data analysis from a human cohort, covering the flu seasons from 2014/15 to 2019/20.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3NLOGQBE3
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ye Shen University of Georgia UGAN_CIVR-HRP
Publications:
The Seasonal Influenza Vaccine Cannot Trigger a Titer Increase Among Some Elderly Individuals. medRxiv Jan 2024. doi: 10.1101/2024.01.17.24301451 [Pubmed: 38293130]
Resources:
PubMed link https://pmc.ncbi.nlm.nih.gov/articles/PMC10827259/]
Assays:None
Clinical Assessments:None

SDY3492: Exploring bias due to below-limit-of-detection in influenza vaccine antibody modeling
Status: New
Description: A case study in applied statistics conducted using data from the CIVIC-UGAFLUVAC human vaccine cohort. Samples were collected before and after, days 21-28, vaccinations and serum samples were analyzed using HAI assays. The bias in modeling vaccine HAI titer increase was investigated, and the titer increase modeling within the interval censoring framework was modified to adjust for bias in parameter estimates.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M36RO0YMMA
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ye Shen University of Georgia UGAN_CIVR-HRP
Publications:
Exploring bias due to below-limit-of-detection values in influenza vaccine antibody modeling: A case study and instructional guide for the CIVIC study. Vaccine Mar 2025. doi: 10.1016/j.vaccine.2025.126802 [Pubmed: 39908720]
Resources:
PubMed https://pubmed.ncbi.nlm.nih.gov/39908720/]
Assays:None
Clinical Assessments:None

SDY3493: Intranasal influenza vaccine mixed with adjuvant elicits protective antibodies against influenza viruses
Status: New
Description: Evaluation of the intranasal delivery of Fluzone, a commercially licensed split-inactivated influenza vaccine, formulated with or without adjuvant. Mice were vaccinated intranasally with Fluzone alone or combined with either Infectimune, a cationic lipid nanoparticle adjuvant, or TRAC478, a synthetic dual toll-like receptor liposome adjuvant containing TLR4 and TLR7/8 agonists. Immune responses were assessed by hemagglutination-inhibition (HAI) assay, ELISA for HA-specific IgG, and measurement of lung viral titers after challenge.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3E2WL9UCB
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ted Ross Other: Cleveland Clinic CLVC_CIVR-HRP
Michael Carlock Other: Cleveland Clinic CLVC_CIVR-HRP
Publications:
None. None None None. doi: None [Pubmed: Not Applicable]
Resources:
Publication in bioRxiv https://www.biorxiv.org/content/10.1101/2025.10.23.684226v1]
Assays:None
Clinical Assessments:None

SDY3494: Mucosal multivalent NDV-based vaccine provides cross-reactive immune responses against SARS-CoV-2 variants in animal models
Status: New
Description: The authors characterize the in vivo biodistribution and immunogenicity of a live mucosal NDV-HXP-S vaccine in animal models.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M3QGQWJNA3
Subjects: 53
Study PI, contact:
NameOrganizationSite
Weina Sun Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai, Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
Publications:
Mucosal multivalent NDV-based vaccine provides cross-reactive immune responses against SARS-CoV-2 variants in animal models. Front Immunol. Mar 2025. doi: 10.3389/fimmu.2025.1524477 [Pubmed: 40165947]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Microscopy 56
Virus Plaque Assay 110
Clinical Assessments:None

SDY3495: Modulation of lipid nanoparticle-formulated plasmid DNA drives innate immune activation promoting adaptive immunity.
Status: New
Description: The investigators describe that tailored formulation of plasmid DNA into LNPs (DNA-LNPs) stabilizes particle formation promoting an improved immune profile with a different phenotype relative to mRNA-LNPs.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M39HKLL3VH
Subjects: 40
Study PI, contact:
NameOrganizationSite
Florian Krammer The Wistar Institute The Wistar Institute, Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
Publications:
Modulation of lipid nanoparticle-formulated plasmid DNA drives innate immune activation promoting adaptive immunity. Cell Rep Med. Apr 2025. doi: 10.1016/j.xcrm.2025.102035 [Pubmed: 40120578]
Resources:
Assays:None
Clinical Assessments:None

SDY3497: Structure and function of a cross-neutralizing influenza neuraminidase antibody that accommodates recent N2 NA Asn245 glycosylation
Status: New
Description: The authors further characterized the monoclonal antibody 1122A11
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M374AI4UKH
Subjects: 1
Study PI, contact:
NameOrganizationSite
Ian Wilson The Scripps Research Institute TSRI_SEM-CIVIC
Publications:
Structure and function of a cross-neutralizing influenza neuraminidase antibody that accommodates recent N2 NA Asn245 glycosylation. Commun Biol. Oct 2025. doi: 10.1038/s42003-025-08830-1 [Pubmed: 41053391]
Resources:
Assays:None
Clinical Assessments:None

SDY3500: Protection against influenza in elderly ferrets by adjuvanted influenza vaccine
Status: New
Description: Elderly ferrets aged 56-74 months old were pre-immunized with A/Singapore/1986 (H1N1) and A/Panama/1999 (H3N2) and vaccinated intramuscularly using COBRA H1 and H3 HA vaccines with one of two adjuvants, TRAC478 or SAS, or no adjuvant at all. Ferrets were later challenged with A/Brisbane/2018 (H1N1). Immune responses were analyzed by hemagglutination inhibition assay, influenza viral plaque assay, enzyme-linked immunosorbent assay, and microneutralization assay. There was an overall enhancement of protective antibodies in adjuvant-vaccinated elderly ferrets.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3RCLQ5EMC
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ted Ross Cleveland Clinic Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
Elicitation of protective immune responses against influenza a viruses in elderly ferrets by adjuvanted recombinant universal influenza hemagglutinin vaccines. Immun Ageing Oct 2025. doi: 10.1186/s12979-025-00539-3 [Pubmed: 41152889]
Resources:
Assays:None
Clinical Assessments:None

SDY3502: Influenza vaccination enhances HAI titers in individuals with hypertension
Status: New
Description: Evaluation of influenza vaccine responses in adults with and without hypertension (HTN), analyzing data from 206 participants who received the 2022-2023 quadrivalent inactivated influenza vaccine. The study measured hemagglutination inhibition (HAI) titers pre- and post-vaccination and also assessed neutralizing antibody titers in a subset of participants who had also received a COVID-19 mRNA vaccine
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3692663LY
Subjects: 0
Study PI, contact:
NameOrganizationSite
Engin Berber Lerner Research Institute Lerner Research Institute, CIVR-HRP
Ted Ross Cleveland Clinic Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:None
Resources:
medrxiv https://www.medrxiv.org/content/10.1101/2025.08.17.25333858v1]
Assays:None
Clinical Assessments:None

Updated Studies

SDY1393: Toll-like Receptors in Older Adults and Response to Vaccination - Year2
Status: Updated
Description: We will identify how age and frailty affect gene expression signatures of vaccine response.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-15-041 Systems Immune Profiling Of Divergent Responses To Infection (Yale)
DOI: 10.21430/M3TW6SIAIL
Subjects: 65
Study PI, contact:
NameOrganizationSite
Albert Shaw Yale Yale
Subhasis Mohanty Yale Yale
Nelson Allison Yale Yale
Publications:
Platelet response to influenza vaccination reflects effects of aging.. Aging cell Feb 2023. doi: 10.1111/acel.13749 [Pubmed: 36656789]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Flow Cytometry 184
Hemagglutination Inhibition 558
RNA sequencing 246
Clinical Assessments:None

SDY3406: Antibody titer elicited by six commercial influenza vaccines
Status: Updated
Description: A three-season (2022-2023 to 2024-2025) study that included 1328 participants, ages 9 to 89 years, received one of six vaccine types (Fluzone standard dose (SD) or high dose (HD), Fluad, Flucelvax, Flublok, Flumist) and had serum samples tested for hemagglutination inhibition (HAI) activity against vaccine strains and historical circulating strains before vaccination and 28 days post vaccination.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3VO0G2RYX
Subjects: 0
Study PI, contact:
NameOrganizationSite
Engin Berber Lerner Research Institute Lerner Research Institute, CIVR-HRP
Ted Ross Cleveland Clinic Cleveland Clinic, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
None. None None None. doi: None [Pubmed: 41990070]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY3454: ScRNAseq reveals allergen-specific signatures in human gdT cells
Status: Updated
Description: In this study, we defined the immune signatures of allergen-reactive gdT cells responding to common allergens, cockroach (CR) and mouse (MO), using sc RNA sequencing (scRNAseq) and a novel Activation-Induced Marker (AIM) flow cytometry assay to provide a high-resolution map of the transcriptional landscapes of gdT cells. While CR extract activated both Vd1 and Vd2 subsets, MO extract primarily stimulated Vd2 cells. Our analysis revealed allergen-specific clusters with distinct functional signatures, including enhanced inflammatory responses and cytotoxic effector functions in MO-specific gdT cells and natural killer cell-mediated immunity and IFNg signaling in CR-specific populations. Comparison of allergic and non-allergic individuals highlighted differences in gene expression and TCR repertoires, including a higher IFNG expression in the CR-allergic compared to non-allergic cohorts, suggesting that phenotypic and functional differences are associated with gdT allergen responses.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-20-079 Respiratory pathogen-specific T cell signatures following vaccination, natural infection, and treatment
DOI: 10.21430/M3TT705GET
Subjects: 53
Study PI, contact:
NameOrganizationSite
Kendall Kearns La Jolla Institute for Immunology La Jolla Institute for Immunology
Alessandro Sette La Jolla Institute for Immunology La Jolla Institute for Immunology
Ricardo Da Silva Antunes La Jolla Institute for Immunology La Jolla Institute for Immunology
Kerstin Westendorf La Jolla Institute for Immunology La Jolla Institute for Immunology
Publications:
Single-cell transcriptional analysis reveals allergen-specific signatures in human gd T cells. JCI insight April 2025. doi: 10.1172/jci.insight.191359 [Pubmed: 40244697]
Resources:
GEO Dataset GSE294268 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE294268]
Assays:
Assay TypeNumber of Exp. Samples
scRNA-seq 84
Clinical Assessments:None