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Proteomics Mass Spectrometry Upload Workflow

Proteomics Mass Spectrometry flow chart

Source: Proteomics_FlowDiagram.pdf (Upload Order).

Template sequence

  1. treatments.txt
  2. experimentSamples.Mass_Spectrometry_Proteomics.txt
  3. Upload your results file — done (no branching)

Upload these within the SAME upload package

treatments.txt and experimentSamples.Mass_Spectrometry_Proteomics.txt must be bundled together in one upload package.

Notes

No reagents step shown

Unlike every other assay workflow, this diagram has no reagents template step between treatments.txt and the experiment-samples template. This is consistent across the source diagram and is not an omission on this page — but it's worth double-checking against the current mass_spec_proteomics template reference in case this changed in a newer schema version.