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DR52.2 DataRelease

Release Date: August 2024
New Studies: 4
Updated Studies: 1

New Studies

SDY2735: Immunology of Severe Febrile Illness in Children
Status: New
Description: A comparative approach to severe febrile illnesses in children may identify shared and distinct features of host immune dysfunction amenable to immunomodulation. Here, using immunophenotyping with mass cytometry and cell stimulation experiments, we illustrate trajectories of immune dysfunction in 74 children with multi-system inflammatory syndrome in children (MIS-C) associated with SARS-CoV-2, 30 with bacterial infection, 16 with viral infection, 8 with Kawasaki disease, and 42 controls. We explore these findings in a secondary cohort of 500 children with these illnesses and 134 controls. We show that neutrophil activation and apoptosis are prominent in multi-system inflammatory syndrome, and that this is partially shared with bacterial infection. We show that memory T cells from patients with multi-system inflammatory syndrome and bacterial infection are exhausted. In contrast, we show viral infection to be characterized by decreased signaling by, and lower gene expression of, interferon receptors. Improved understanding of immune dysfunction may improve approaches to immunomodulator therapy in severe febrile illnesses in children.
Program/Contract:
ProgramContract
European Union’s Horizon 2020 Program DIAMONDS (Diagnosis and Management of Febrile Illness using RNA Personalised Molecular Signature Diagnosis)
European Union’s Horizon 2020 Program PERFORM (Personalised Risk assessment in febrile illness to Optimise Real-life Management across the European Union)
European Union’s Horizon 2020 Program EUCLIDS (The genetic basis of meningococcal and other life threatening bacterial infections of childhood)
DOI: 10.21430/M3GTQGMQZ4
Subjects: 152
Study PI, contact:
NameOrganizationSite
Michael Carter Imperial College London King's College London and Imperial College London
Publications:None
Resources:
Diamonds Search Study https://www.diamonds2020.eu]
Assays:None
Clinical Assessments:None

SDY2739: Clinical Immunity to Malaria Involves Epigenetic Reprogramming of Innate Immune Cells
Status: New
Description: The regulation of inflammation is a critical aspect of disease tolerance and naturally acquired clinical immunity to malaria. In our study, we demonstrate using epigenetic landscape profiling by cytometry by Time-Of-Flight (EpiTOF), that the regulation of inflammatory pathways during asymptomatic parasitemia occurs downstream of pathogen sensing, at the epigenetic level. The abundance of certain epigenetic markers (methylation of H3K27 and dimethylation of arginine residues) and decreased prevalence of histone variant H3.3 correlated with suppressed cytokine responses among monocytes of Ugandan children. Such an epigenetic signature was observed across diverse immune cell populations and not only characterized active asymptomatic parasitemia but also correlated with future long-term disease tolerance and clinical immunity when observed in uninfected children. Pseudotime analyses revealed a potential trajectory of epigenetic change that correlated with age and recent parasite exposure and paralleled the acquisition of clinical immunity. Thus, our data support a model whereby exposure to Plasmodium falciparum induces epigenetic changes that regulate excessive inflammation and contribute to naturally acquired clinical immunity to malaria.
Program/Contract:
ProgramContract
NIH Program Computational models of naturally acquired immunity to falciparum malaria
DOI: 10.21430/M3TUYD1G2N
Subjects: 12
Study PI, contact:
NameOrganizationSite
Prasanna Jagannathan Stanford University Stanford University
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 72
Clinical Assessments:None

SDY2753: Bystander monocytic cells drive infection-independent NLRP3 inflammasome response to SARS-CoV-2
Status: New
Description: The pathogenesis of COVID-19 is associated with a hyperinflammatory immune response. Monocytes and macrophages play a central role in this hyperinflammatory response to SARS-CoV-2. NLRP3 inflammasome activation has been observed in monocytes of patients with COVID-19, but the mechanism and consequences of inflammasome activation require further investigation. In this study, we inoculated a macrophage-like THP-1 cell line, primary differentiated human nasal epithelial cell (hNEC) cultures, and primary monocytes with SARS-CoV-2. We found that the activation of the NLRP3 inflammasome in macrophages does not rely on viral replication, receptor-mediated entry, or actin-dependent entry. SARS-CoV-2 productively infected hNEC cultures without triggering the production of inflammasome cytokines IL-18 and IL-1β. Importantly, these cytokines did not inhibit viral replication in hNEC cultures. SARS-CoV-2 inoculation of primary monocytes led to inflammasome activation and induced a macrophage phenotype in these cells. Monocytic cells from bronchoalveolar lavage (BAL) fluid, but not from peripheral blood, of patients with COVID-19, showed evidence of inflammasome activation, expressed the proinflammatory marker CD11b, and displayed oxidative burst. These findings highlight the central role of activated macrophages, as a result of direct viral sensing, in COVID-19 and support the inhibition of IL-1β and IL-18 as potential therapeutic strategies to reduce immunopathology without increasing viral replication.
Program/Contract:
ProgramContract
SeroNet Johns Hopkins Excellence in Pathogenesis and Immunity Center for SARS-CoV-2 (JH-EPICS)
DOI: 10.21430/M37BXVEH52
Subjects: 0
Study PI, contact:
NameOrganizationSite
Andrew Karaba Johns Hopkins Medical Institute Johns Hopkins Medical Institute
Andrea Cox Johns Hopkins Medical Institute Johns Hopkins Medical Institute
Andrew Pekosz Johns Hopkins University Johns Hopkins University
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Colorimetric Cell Viability Assay 0
ELISA 0
Flow Cytometry 0
Microscopy 0
PCR 0
Virus Plaque Assay 0
Clinical Assessments:None

SDY2760: Protective effect and molecular mechanisms of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination
Status: New
Description: The researchers investigated whether particular non-neutralizing antibodies could contribute to protection from SARS-CoV-2 infection in a lethal animal model.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Sinai-Emory Multi-Institutional CIVIC (SEM CIVIC)
DOI: 10.21430/M3RVR85FZ3
Subjects: 329
Study PI, contact:
NameOrganizationSite
Florian Krammer Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai, Sinai-Emory Multi-Institutional CIVIC (SEM-CIVIC)
Viviana Simon Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai, Sinai-Emory Multi-Institutional CIVIC (SEM-CIVIC)
Publications:
Protective effect and molecular mechanisms of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination.. bioRxiv : the preprint server for biology Mar 2024. doi: 10.1101/2024.02.28.582613 [Pubmed: 38464151]
Resources:
Not Applicable Not Applicable]
Assays:
Assay TypeNumber of Exp. Samples
ELISA 235
Virus Neutralization 16
Virus Plaque Assay 168
Clinical Assessments:
Physical Exam

Updated Studies

SDY2656: SeroNet Reference Study v2.2
Status: Updated
Description: The National Cancer Institute’s Serological Sciences Network (SeroNet) is the nation’s largest coordinated effort to study the immune response to COVID-19 and increase the nation’s antibody testing capacity. SeroNet is a collaboration across 26 biomedical research institutions to enhance understanding of the immune response to the novel coronavirus, SARS-CoV-2. The COVID-19 Serology Laboratory coordinates much of the SeroNet research and is leading COVID-19 serology standardization efforts for the network. The SeroNet Coordinating Center, headquartered at and managed by the Vaccine, Immunity, and Cancer Directorate at the Frederick National Laboratory, provides program logistical support. SeroNet launched in October 2020, less than a year into the COVID-19 pandemic. It aims to answer critical questions regarding serology and the pandemic. SeroNet is a major component of the National Cancer Institute’s response to COVID-19. In April 2020, the National Cancer Institute received an emergency appropriation of $306 million from Congress to develop, validate, and implement serological testing and associated technologies. More than half of the funding is devoted to SeroNet. Data and studies generated by SeroNet are available on the ImmPort system, which provides a sustainable, publicly accessible archive of data generated by investigators at the National Institute of Allergy and Infectious Diseases. In early 2021, the Frederick National Laboratory supported the development and production of the Human SARS-CoV-2 Serology Standard for calibration in COVID-19 studies conducted around the U.S. and world. Lab scientists have worked with the National Cancer Institute, U.S. Food and Drug Administration, Centers for Disease Control and Prevention, other government agencies, and universities to develop sample evaluation panels to evaluate the performance (sensitivity and specificity) of antibody tests developed by external organizations before they are made available to the public.
Program/Contract:
ProgramContract
SeroNet Frederick National Laboratory for Cancer Research (FNLCR) Center for SARS-CoV-2 Serological Sciences
DOI: 10.21430/M3AUTZYP4Q
Subjects: 909
Study PI, contact:
NameOrganizationSite
Ligia Pinto Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Nancy Roche Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Troy Kemp Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Thomas Hickey Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Patrick Breads Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Elaine Freund Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Deborah Hope Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Anjan Purkayastha Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Peter Gregersen Feinstein Institute For Medical Research Feinstein Institute For Medical Research
Amy Karger University of Minnesota University of Minnesota
Joshua Labaer Arizona State University Arizona State University
Carlos Cordon-cardo Icahn Scool of Medicine at Mt. Sinai Icahn Scool of Medicine at Mt. Sinai
Prem Lakshmanane University of North Carolina at Chapel Hill University of North Carolina at Chapel Hill
Ralph Baric University of North Carolina at Chapel Hill University of North Carolina at Chapel Hill
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
Chemiluminescent Assay 8909
ELISA 5009
Lateral Flow Assay 4
Multiplex Immunoassay 71
Clinical Assessments:
Comorbidity
COVID-19 Symptom Status
Prior PCR Testing Results