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DR54.2 DataRelease

Release Date: February 2025
New Studies: 14
Updated Studies: 11

New Studies

SDY2470: T cell responses to H1N1v and a longitudinal study of seasonal influenza vaccination SLVP015 2016
Status: New
Description: Systems biology approach to examine effects of seasonal flu vaccination in adults of different ages on gene expression, cytokine stimulation and serum cytokines with parameters such as immune senescence to uncover new markers and mechanisms behind failure of immune function in many older people.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M3OTD0Z7JJ
Subjects: 103
Study PI, contact:
NameOrganizationSite
Mark Davis Stanford Stanford
Cornelia Dekker Stanford Stanford
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 459
Luminex xMAP 204
Clinical Assessments:None

SDY2485: T cell responses to H1N1v and a longitudinal study of seasonal influenza vaccination SLVP015 2015
Status: New
Description: Systems biology approach to examine effects of seasonal flu vaccination in adults of different ages on gene expression, cytokine stimulation and serum cytokines with parameters such as immune senescence to uncover new markers and mechanisms behind failure of immune function in many older people.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M3NGUZLCHS
Subjects: 103
Study PI, contact:
NameOrganizationSite
Mark Davis Stanford Stanford
Cornelia Dekker Stanford Stanford
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 681
Luminex xMAP 138
Clinical Assessments:None

SDY2914: Tumor-specific CD8+ Tc9 cells activate host CD4+ T cells to control antigen-lost tumors
Status: New
Description: Tumors from six mice in each group were minced into small pieces in cold RPMI 1640 medium, transferred into the gentleMACS C Tube containing the enzyme mix from Tumor Dissociation Kit (Miltenyi Biotec, 130-096-730), and then digested in gentleMACS Octo Dissociator, followed by filtration with 70 mm cell strainers.Filtered cells were purified by percoll gradient centrifugation as previously described to obtain leukocyte, and enriched by CD45 MicroBeads Kit (Miltenyi Biotec, 130-052-301) and suspended in FACS buffer.Obtained single-cell suspension was sent to Houston Methodist Research Institute ImmunoMonitoring Core for blocking, staining, washing and CyTOF detection. After mass cytometry (CyTOF) acquisition, raw measurement data (FCS files) and all metadata were preprocessed for concatenation, normalization, and compensation using CATALYST in R software. Dead cells were manually removed using FlowJo. Cell clustering was conducted as previously described using custom R scripts based on the FlowSOM and ConsensusClusterPlus, CATALYST, and Rtsne. By default, marker expression data transformation was performed using the prepData() SCE constructor arcsinh transform function with a cofactor of 5. The cluster merging and annotation were conducted based on heatmaps of marker expression in cell populations. Color in the heatmap represents the median of the arcsinh, 0-1 transformed marker expression was calculated for cells from all samples, the lineage markers, and cells in each sample individually, for the signaling marker.
Program/Contract:
ProgramContract
Other Programs A novel T-cell subset able to kill relapsed cancers
NIH Program Role of tumor microenvironment-derived cholesterol in CD8+ T-cell exhaustion
NIH Program Novel mechanism of induction of tumor pyroptosis by IL-9-secreting Tc9 cells
NIH Program Tumor-specific CD8+ Tc9 cells activate host CD4+ T cells to control antigen-lost tumors
DOI: 10.21430/M3M02ERG3V
Subjects: 4
Study PI, contact:
NameOrganizationSite
Liuling Xiao Chongqing Medical University NO
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 4
Clinical Assessments:None

SDY2948: Gene expression profile and active TB risk association with HLA class II alleles
Status: New
Description: Several HLA allelic variants have been associated with protection from or susceptibility to infectious and autoimmune diseases. Here, we examined whether specific HLA alleles would be associated with different Mycobacterium tuberculosis (Mtb) infection outcomes. The HLA alleles present at the -A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, -DRB1, and -DRB3/4/5 loci were determined in individuals with known Mtb infection outcomes. We found that DQA1*03:01, DPB1*04:02, and DRB4*01:01 were significantly more frequent in individuals with active TB (susceptibility alleles), while DPB1*105:01 was associated with protection from active TB. Peripheral blood mononuclear cells (PMBCs) from a subset of individuals were stimulated with Mtb antigens, revealing individuals who express any of the three susceptibility alleles were associated with lower magnitude of responses. Furthermore, we defined a gene signature associated with individuals expressing the susceptibility alleles that was characterized by lower expression of APC-related genes.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-15-041 Human immune signatures of dengue virus and mycobacterium tuberculosis exposure in infection; disease and vaccination (La Jolla)
DOI: 10.21430/M3DAI1PIQP
Subjects: 636
Study PI, contact:
NameOrganizationSite
Leila Chihab La Jolla Institute for Immunology LJI Center for Vaccine Innovation
Bjoern Peters La Jolla Institute for Immunology LJI Center for Vaccine Innovation
Cecilia Lindestam Arlehamn La Jolla Institute for Immunology LJI Center for Vaccine Innovation
Publications:
Expression of specific HLA class II alleles is associated with an increased risk for active tuberculosis and a distinct gene expression profile.. HLA Feb 2023. doi: 10.1111/tan.14880 [Pubmed: 36373948]
Resources:
Assays:
Assay TypeNumber of Exp. Samples
ELISPOT 144
HLA Typing 636
RNA sequencing 149
Clinical Assessments:None

SDY2951: Pharmacokinetics and Biodistribution of 16,16 dimethyl Prostaglandin E2 in Non-Irradiated and Irradiated Mice and Non-Irradiated Non-Human Primates
Status: New
Description: Exposure to high dose ionizing radiation can lead to life-threatening injuries and mortality. Bone marrow is the most sensitive organ to radiation damage, resulting in the hematopoietic acute radiation syndrome (H-ARS) with the potential sequelae of infection, hemorrhage, anemia, and death if untreated. The development of medical countermeasures (MCMs) to protect or mitigate radiation injury is a medical necessity. In our well-established murine model of H-ARS we have demonstrated that the prostaglandin E2 (PGE2) analog 16,16 dimethyl-PGE2 (dmPGE2) has survival efficacy as both a radioprotectant and radiomitigator. The purpose of this study was to evaluate the pharmacokinetics (PK) and biodistribution of dmPGE2 in irradiated and non-irradiated inbred C57BL/6J mice, PK in irradiated and non-irradiated Jackson Diversity Outbred (JDO) mice, and the PK profile of dmPGE2 in non-irradiated non-human primates (NHPs). The C57BL/6J and JDO mice each received a single subcutaneous (SC) dose of 35 ug of dmPGE2 and were randomized to either receive radiation 30 min later or remain non-irradiated. Plasma and tissue PK profiles were established. The NHP were dosed with 0.1mg/kg by SC administration and the PK profile in plasma was established. The concentration time profiles were analyzed by standard non-compartmental analysis and the metrics of AUC0-Inf, AUC60-480 (AUC from 60-480 minutes), Cmax, and t1/2 were evaluated. AUC60-480 represents the post irradiation time frame and was used to assess irradiation effect.
Program/Contract:
ProgramContract
NIH Program Intercollaborative Radiation Countermeasure (INTERACT) Consortium for Advanced Development of Medical Countermeasures to Mitigate/Treat Acute and Delayed Radiation Syndromes
Other Programs Joint Warfighters Medical Research Program, Department of Defense
DOI: 10.21430/M33TEX2T16
Subjects: 0
Study PI, contact:
NameOrganizationSite
Pratibha Singh Department of Medicine, Division of Hematology/Oncology, Indiana University School of Medicine Indiana University School of Medicine
P. Artur Plett Department of Medicine, Division of Hematology/Oncology, Indiana University School of Medicine Indiana University School of Medicine
Isabel L. Jackson Division of Translational Radiation Sciences, Department of Radiation Oncology University of Maryland School of Medicine
Christie M. Orschell Department of Medicine, Division of Hematology/Oncology, Indiana University School of Medicine Indiana University School of Medicine
Louis M. Pelus Department of Medicine, Division of Hematology/Oncology, Indiana University School of Medicine Indiana University School of Medicine
Mathangi Gopalakrishnan Center for Translational Medicine, University of Maryland School of Pharmacy University of Maryland School of Pharmacy
Brooke Langevin University of Maryland University of Maryland
Publications:
Pharmacokinetics and Biodistribution of 16,16 dimethyl Prostaglandin E2 in Non-Irradiated and Irradiated Mice and Non-Irradiated Non-Human Primates. Radiat Res. Jan 2024. doi: 10.1667/RADE-23-00040.1 [Pubmed: PMID: 38019093]
Resources:
Assays:None
Clinical Assessments:None

SDY2958: Type 2 inflammation reduces SARS-CoV-2 replication in the airway epithelium in allergic asthma through functional alteration of ciliated epithelial cells I
Status: New
Description: Bronchial AECs from healthy nonsensitized children (n= 17) and children with allergic asthma (n= 15) aged 6 to 18 years (Tables I and II) were obtained from subjects while under general anesthesia; the cells were obtained by using 4-mm Harrell unsheathed bronchoscope cytology brushes (ConMed, Utica, NY). As we and others have described33,34 an unprotected brush was inserted through an endotracheal tube, advanced until resistance was felt, and rubbed against the airway surface for 2 seconds. Cells were then seeded onto T-25 cell culture flasks precoated with type I collagen and proliferated under submerged culture conditions
Program/Contract:
ProgramContract
NIH Program Dysregulated asthmatic epithelial interferon responses to viruses drive exacerbation, T2 inflammation, and airway remodeling
DOI: 10.21430/M3W2K172DX
Subjects: 0
Study PI, contact:
NameOrganizationSite
Naresh Doni Jayavelu Benaroya Research Institute Benaroya Research Institute
Publications:
Type 2 inflammation reduces SARS-CoV-2 replication in the airway epithelium in allergic asthma through functional alteration of ciliated epithelial cells.. The Journal of allergy and clinical immunology Jul 2023. doi: 10.1016/j.jaci.2023.03.021 [Pubmed: 37001649]
Resources:
GEO Data https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252878]
Assays:None
Clinical Assessments:None

SDY2959: Impaired innate and adaptive immune responses to BNT162b2 SARS-CoV-2 vaccination in systemic lupus erythematosus
Status: New
Description: Understanding the immune responses to SARS-CoV-2 vaccination is critical to optimizing vaccination strategies for individuals with autoimmune diseases, such as systemic lupus erythematosus (SLE). Here, we comprehensively analyzed innate and adaptive immune responses in 19 patients with SLE receiving a complete 2-dose Pfizer-BioNTech mRNA vaccine (BNT162b2) regimen compared with a control cohort of 56 healthy control (HC) volunteers. Patients with SLE exhibited impaired neutralizing antibody production and antigen-specific CD4+ and CD8+ T cell responses relative to HC. Interestingly, antibody responses were only altered in patients with SLE treated with immunosuppressive therapies, whereas impairment of antigen-specific CD4+ and CD8+ T cell numbers was independent of medication. Patients with SLE also displayed reduced levels of circulating CXC motif chemokine ligands, CXCL9, CXCL10, CXCL11, and IFN-γ after secondary vaccination as well as downregulation of gene expression pathways indicative of compromised innate immune responses. Single-cell RNA-Seq analysis reveals that patients with SLE showed reduced levels of a vaccine-inducible monocyte population characterized by overexpression of IFN-response transcription factors. Thus, although 2 doses of BNT162b2 induced relatively robust immune responses in patients with SLE, our data demonstrate impairment of both innate and adaptive immune responses relative to HC, highlighting a need for population-specific vaccination studies.
Program/Contract:
ProgramContract
SeroNet Mechanisms and Duration of Immunity to SARS-CoV-2
DOI: 10.21430/M3V1RASA10
Subjects: 0
Study PI, contact:
NameOrganizationSite
Holden Maecker Stanford University Stanford University
Scott Boyd Stanford University Stanford University
Mark Davis Stanford University Stanford University
Kari Nadeau Stanford University Stanford University
Publications:
Impaired innate and adaptive immune responses to BNT162b2 SARS-CoV-2 vaccination in systemic lupus erythematosus.. JCI insight Mar 2024. doi: 10.1172/jci.insight.176556 [Pubmed: 38456511]
Resources:
Raw Mean Fluorescence Intensity MFI data in GEO: GSE260475 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260475]
Raw Mean Fluorescence Intensity MFI data in GEO: GSE260478 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE260478]
RNA-seq data in GEO: GSE250023 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250023]
PBMC samples data from 3 patients in GEO: GSE250024 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE250024]
Assays:
Assay TypeNumber of Exp. Samples
Chemiluminescent Assay 0
Flow Cytometry 0
Multiplex Bead Array Assay 0
Pseudovirus Neutralization Assay 0
RNA sequencing 0
Clinical Assessments:None

SDY2962: SARS-CoV-2 and Influenza A Virus Coinfections in Ferrets
Status: New
Description: Ferrets were coinfected with SARS-CoV-2 and human seasonal influenza A viruses (IAVs; H1N1 or H3N2) and were compared to animals that received each virus alone
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3X2ANDCDF
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ying Huang University of Georgia University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Ted Ross Other: Cleveland Clinic University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
SARS-CoV-2 and Influenza A Virus Coinfections in Ferrets.. Journal of virology Mar 2022. doi: 10.1128/JVI.01791-21 [Pubmed: 34936487]
Resources:
PubMed Publication https://pubmed.ncbi.nlm.nih.gov/34936487/]
Assays:None
Clinical Assessments:None

SDY2963: A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes
Status: New
Description: Seasonal influenza vaccines offer little protection against pandemic influenza virus strains. It is difficult to create effective prepandemic vaccines because it is uncertain which influenza virus subtype will cause the next pandemic. In this work, we developed a nucleoside-modified messenger RNA (mRNA)-lipid nanoparticle vaccine encoding hemagglutinin antigens from all 20 known influenza A virus subtypes and influenza B virus lineages. This multivalent vaccine elicited high levels of cross-reactive and subtype-specific antibodies in mice and ferrets that reacted to all 20 encoded antigens. Vaccination protected mice and ferrets challenged with matched and mismatched viral strains, and this protection was at least partially dependent on antibodies. Our studies indicate that mRNA vaccines can provide protection against antigenically variable viruses by simultaneously inducing antibodies against multiple antigens.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Duke CIVIC Vaccine Center (DCVC)
DOI: 10.21430/M3ZUEULG98
Subjects: 158
Study PI, contact:
NameOrganizationSite
Scott Hensley University of Pennsylvania University of Pennsylvania, Duke CIVICs Vaccine Center (DCVC)
Publications:
A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes.. Science (New York, N.Y.) Nov 2022. doi: 10.1126/science.abm0271 [Pubmed: 36423275]
Resources:
Science https://doi.org/10.1126/science.abm0271]
Assays:None
Clinical Assessments:
Not Applicable

SDY2964: Insights into the Chemical Exposome during Pregnancy: A Non-Targeted Analysis of Preterm and Term Births
Status: New
Description: Human-made chemicals are ubiquitous, leading to chronic exposure to complex mixtures of potentially harmful substances. We investigated chemical exposures in pregnant women in New York City by applying a non-targeted analysis (NTA) workflow to 95 paired prenatal urine and serum samples (35 pairs of preterm birth) collected as part of the New York University Children's Health and Environment Study. We analyzed all samples using liquid chromatography coupled with Orbitrap high-resolution mass spectrometry in both positive and negative electrospray ionization modes, employing full scan and data-dependent MS/MS fragmentation scans. We detected a total of 1524 chemical features for annotation, with 12 chemicals confirmed by authentic standards. Two confirmed chemicals dodecyltrimethylammonium and N,N-dimethyldecylamine N-oxide appear to not have been previously reported in human blood samples. We observed a statistically significant differential enrichment between urine and serum samples, as well as between preterm and term birth (p < 0.0001) in serum samples. When comparing between preterm and term births, an exogenous contaminant, 1,4-cyclohexanedicarboxylic acid (tentative), showed a statistical significance difference (p = 0.003) with more abundance in preterm birth in serum. An example of chemical associations (12 associations in total) observed was between surfactants (tertiary amines) and endogenous metabolites (fatty acid amides).
Program/Contract:
ProgramContract
March of Dimes March of Dimes
DOI: 10.21430/M3Z9U7J8RM
Subjects: 0
Study PI, contact:
NameOrganizationSite
Xiaowen Ji NYU Grossman School of Medicine Division of Environmental Pediatrics
Dimitri Abrahamsson UCSF; NYU Grossman School of Medicine Department of Obstetrics, Gynecology and Reproductive Sciences; Division of Environmental Pediatrics
Publications:
Insights into the Chemical Exposome during Pregnancy: A Non-Targeted Analysis of Preterm and Term Births.. Environmental science & technology Nov 2024. doi: 10.1021/acs.est.4c08534 [Pubmed: 39526929]
Resources:
Full Article https://doi.org/10.1021/acs.est.4c08534]
Supplementary Information https://pubs.acs.org/doi/suppl/10.1021/acs.est.4c08534/suppl_file/es4c08534_si_002.pdf]
GitHub Scripts https://github.com/jixiaowen4321/Jixiaowen]
Assays:
Assay TypeNumber of Exp. Samples
High-Resolution Mass Spectrometry 0
Clinical Assessments:None

SDY2965: Influenza Vaccination
Status: New
Description: In this study, we compared vaccine-induced humoral immune responses induced by seasonal influenza vaccination with inactived vaccine (IIV/Fluzone) and live attenuated mucosal vaccine (LAIV/FluMist) in humans.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3WBGCDKFD
Subjects: 0
Study PI, contact:
NameOrganizationSite
Daniel Lingwood Ragon Institute of MGH, MIT, and Harvard Ragon Institute of MGH, MIT, and Harvard, CIVR-HRP
Publications:
Distinct Functional Humoral Immune Responses Are Induced after Live Attenuated and Inactivated Seasonal Influenza Vaccination.. Journal of immunology (Baltimore, Md. : 1950) Jan 2024. doi: 10.4049/jimmunol.2200956 [Pubmed: 37975667]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:None

SDY2966: Ab Responses to HA mRNA
Status: New
Description: Mice were vaccinated with mRNA-HA and assessed for immune responses
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3UPGIPX6O
Subjects: 120
Study PI, contact:
NameOrganizationSite
James Allen Other: Cleveland Clinic University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Ted Ross Other: Cleveland Clinic University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
mRNA vaccines encoding computationally optimized hemagglutinin elicit protective antibodies against future antigenically drifted H1N1 and H3N2 influenza viruses isolated between 2018-2020.. Frontiers in immunology Mar 2024. doi: 10.3389/fimmu.2024.1334670 [Pubmed: 38533508]
Resources:
Not Applicable Not Applicable]
Assays:
Assay TypeNumber of Exp. Samples
Hemagglutination Inhibition 598
Virus Neutralization 420
Virus Plaque Assay 30
Clinical Assessments:
Not Applicable

SDY2967: Zinc Carnosine Metal-Organic Coordination Polymer as a Potent Influenza Vaccine Platform
Status: New
Description: Evaluation of Zinc Carnosine Metal-Organic coordination polymer as a delivery vehicle for COBRA HA Y2 and the adjuvant CpG. Immunogenicity was assessed in vivo in mice vaccinated with Y2 and CpG complexed with ZnCar, demonstrating improved humoral and cellular responses compared to mice vaccinate with Y2 and CpG only. The ZnCar complex shows superiority in storage stability as well.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3THVHFSFN
Subjects: 90
Study PI, contact:
NameOrganizationSite
Kristy Ainslie University of North Carolina University of North Carolina, CIVR-HRP
Publications:
Zinc Carnosine Metal-Organic Coordination Polymer as a Potent Broadly Active Influenza Vaccine Platform with In Vitro Shelf-Stability.. Molecular pharmaceutics Sep 2023. doi: 10.1021/acs.molpharmaceut.3c00424 [Pubmed: 37603310]
Resources:
Not Applicable Not Applicable]
Assays:None
Clinical Assessments:
Not Applicable

SDY2968: COVID-19 vaccination perspectives among patients with Long COVID: A qualitative study
Status: New
Description: Individuals who have Long COVID may have unique perspectives about COVID-19 vaccination due to the significant impact that COVID-19 has had on their lives. However, little is known about the specific vaccination perspectives among this patient population. The goal of our study was to improve our understanding of perspectives about COVID-19 vaccines among individuals with Long COVID. Interviews were conducted with patients receiving care at a post-COVID recovery clinic. Deductive thematic analysis was used to characterize participant perspectives according to the vaccine acceptance continuum framework, which recognizes a spectrum from vaccine acceptance to refusal. From interviews with 21 patients, we identified perspectives across the continuum of vaccine acceptance. These perspectives included acceptance of vaccines to prevent future illness, concerns about vaccine side effects on Long COVID symptoms, and refusal of vaccines due to perceived natural immunity. A limitation of our study is that these perspectives are specific to individuals receiving care at one post-COVID recovery clinic. In conclusion, our study demonstrates that some patients with Long COVID are uncertain about COVID-19 vaccines and boosters but may also be amenable to conversations that impact future vaccination acceptance. Patient perspectives should be considered when communicating recommendations for COVID-19 vaccinations to this population.
Program/Contract:
ProgramContract
SeroNet Center for Serological Testing to Improve Outcomes from Pandemic COVID-19 (STOP-COVID)
DOI: 10.21430/M3J8UMVGT6
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ann Mcalearney The Ohio State University Medical Center The Ohio State University Medical Center
Alice Gaughan The Ohio State University The Ohio State University
Publications:
COVID-19 vaccination perspectives among patients with Long COVID: A qualitative study.. Human vaccines & immunotherapeutics Dec 2024. doi: 10.1080/21645515.2024.2327663 [Pubmed: 38532547]
Resources:
Assays:None
Clinical Assessments:None

Updated Studies

SDY406: Immune Responses to Influenza-Like Illness SLVP022 2013 through 2018
Status: Updated
Description: To investigate the nasal transcriptional response and peripheral plasmablast response in acute influenza infection
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M3U4SDFNWN
Subjects: 86
Study PI, contact:
NameOrganizationSite
Harry Greenberg Stanford School of Medicine Stanford School of Medicine
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 567
ELISA 6
Hemagglutination Inhibition 6
Luminex xMAP 154
Other 39
Transcription profiling by array 4
Clinical Assessments:None

SDY1467: B-cell Immunity to Influenza SLVP017 2009
Status: Updated
Description: Systems biology approach to examine effects of seasonal flu vaccination in adults of different ages on gene expression, cytokine stimulation and serum cytokines with parameters such as immune senescence to uncover new markers and mechanisms behind failure of immune function in many older people.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M3BNBGK39S
Subjects: 51
Study PI, contact:
NameOrganizationSite
Mark Davis Stanford University Stanford University
Publications:
The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system.. Scientific data Oct 2019. doi: 10.1038/s41597-019-0213-4 [Pubmed: 31636302]
Resources:
CliicalTrials.gov https://clinicaltrials.gov/ct2/show/NCT02133781]
Assays:
Assay TypeNumber of Exp. Samples
Hemagglutination Inhibition 294
Luminex xMAP 290
Meso Scale Discovery ECL 145
Clinical Assessments:None

SDY1481: Genetic and Environmental Factors in the Response to Influenza Vaccination 2014
Status: Updated
Description: This is a phase IV study of 120 healthy 12-49 year old adolescents and adult volunteers who are given licensed seasonal influenza vaccine. There are no exclusions for gender, ethnicity or race. The volunteers will be enrolled into one of 3 groups: Group A: Up to 40 healthy monozygotic (MZ) twin volunteers, 12-49 years old, will be given inactivated influenza vaccine quadrivalent (IIV4). Each volunteer will complete a total of 3 visits: Day 0 (pre-immunization), Day 6-8 and Day 28+ 7 post-immunization. All visits will consist of drawing blood for study assays and monitoring for serious adverse events (SAEs). Group B: Up to 40 healthy dizygotic (DZ) twin volunteers, 12-49 years old, will be given inactivated influenza vaccine quadrivalent (IIV4). Each volunteer will complete a total of 3 visits: Day 0 (pre-immunization), Day 6-8 and Day 28+7 post-immunization. All visits will consist of drawing blood for study assays and monitoring for serious adverse events (SAEs). Group C: Up to 40 healthy monozygotic (MZ) twin volunteers, 12-49 years old, will be randomized within the twin pair to receive either inactivated influenza vaccine quadrivalent (IIV4) or live, attenuated influenza vaccine quadrivalent (LAIV4). Each volunteer will complete a total of 3 visits: Day 0 (pre-immunization), Day 6-8 and Day 28+7 post-immunization. All visits will consist of drawing blood for study assays and monitoring for serious adverse events (SAEs). This group was discontinued in 2016 due to ACIP recommendations against the use of LAIV but may be reopened in 2018 pending LAIV4 availability. Each twin is counted as a single participant. All reporting numbers reflect the number of participants, not the number of twin pairs.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M3KVQXST4E
Subjects: 114
Study PI, contact:
NameOrganizationSite
Cornelia Dekker Stanford University Stanford University
Publications:
The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system.. Scientific data Oct 2019. doi: 10.1038/s41597-019-0213-4 [Pubmed: 31636302]
Resources:
clinicaltrials.gov https://clinicaltrials.gov/ct2/show/record/NCT03088904]
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 653
Luminex xMAP 298
Meso Scale Discovery ECL 44
Other 42
Clinical Assessments:None

SDY1483: Innate and Acquired Immunity to Influenza Infection and Immunization (SLVP029)
Status: Updated
Description: This is a study of healthy children and adults receive the current seasonal influenza vaccine. The volunteers were enrolled into one of 7 groups over a 5-year period. Immunization is administered; blood samples and NP swabs are collected at various time points based on groups assigned. Group A (LAIV4/annual return), Group B (LAIV4/ single year), Group C (LAIV4/NP swab group), Group D (IIV4/annual return), Group E (IIV4/single year), Group F (LAIV4/single year), Group G (IIV4/single year)
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M34YFGITWS
Subjects: 79
Study PI, contact:
NameOrganizationSite
Cornelia Dekker Stanford University Stanford University
Publications:
The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system.. Scientific data Oct 2019. doi: 10.1038/s41597-019-0213-4 [Pubmed: 31636302]
Resources:
clinicaltrials.gov https://clinicaltrials.gov/ct2/show/record/NCT03028974]
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 606
Luminex xMAP 151
Meso Scale Discovery ECL 68
Clinical Assessments:None

SDY1484: Role of CD4+ Memory Phenotype, Memory, and Effector T Cells in Vaccination and Infection (SLVP030)
Status: Updated
Description: This is a Phase IV study of up to 100 healthy children, ages 6 months to 10 years of age, who will receive either Flumist live, attenuated influenza virus vaccine, quadrivalent (LAIV4) or the current Fluzone inactivated influenza vaccine, quadrivalent (IIV4). The volunteers will be enrolled into one of 3 Groups (A, B, C). Volunteers will return each year until 2018-2019 for annual flu immunizations and study visits. Questionnaires will be administered annually to record demographic characteristics, vaccination history, exposure to animals, day care and medically attended illness. There are no exclusions for gender, ethnicity or race. Volunteers in Group C will also receive the measles, mumps, rubella and varicella (MMRV) vaccine at approximately 12-15 months of age (to be administered by the volunteers' personal pediatrician, not as a study vaccine). They will then come for a study visit to collect blood 60 days later. Each twin is counted as a single participant. All reporting numbers reflect the number of participants, not the number of twin pairs.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-14-007, RFA-AI-09-040 Vaccination and infection: indicators of immunological health and responsiveness
DOI: 10.21430/M3VRIZVVE5
Subjects: 81
Study PI, contact:
NameOrganizationSite
Cornelia Dekker Stanford University Stanford University
Publications:
The FluPRINT dataset, a multidimensional analysis of the influenza vaccine imprint on the immune system.. Scientific data Oct 2019. doi: 10.1038/s41597-019-0213-4 [Pubmed: 31636302]
Resources:
clinicaltrials.gov https://clinicaltrials.gov/ct2/show/record/NCT03453801]
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 167
Hemagglutination Inhibition 88
Luminex xMAP 504
Meso Scale Discovery ECL 24
Other 36
Clinical Assessments:None

SDY2497: Effects of Aging on Primary and Secondary Vaccine Responses in a 15-Year Longitudinal Cohort
Status: Updated
Description: Investigators will carry out an in-depth study of human B cell and T cell immune responses to vaccines that the person hasn't previously encountered, as well as to seasonal influenza vaccination, and determine which aspects of immune function are most affected by aging in each case. The research subjects are a well-characterized longitudinal cohort of young and elderly individuals whose influenza vaccine responses have been studied each year for up to 9 years, and who will be vaccinated for Hepatitis A in this new study. Improved understanding of human immune system function obtained by studying individual B cells and T cells and their fates following vaccination will help in the design and testing of new vaccines against emergent diseases.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-20-079 Leveraging human organoid models for the development of broad interventions to mitigate emergent respiratory viral pandemics
DOI: 10.21430/M3Y7FDJGD6
Subjects: 57
Study PI, contact:
NameOrganizationSite
Philip Grant Stanford Stanford
Tri Nguyen Stanford Stanford
Scott Boyd Stanford Stanford
Publications:None
Resources:
Assays:
Assay TypeNumber of Exp. Samples
CyTOF 80
Luminex xMAP 606
Other 187
Clinical Assessments:None

SDY2531: Engineered Influenza Virus Virions Reveal the Contributions of Non-hemagglutinin Structural Proteins to Vaccine-Mediated Protection
Status: Updated
Description: The development of improved and universal anti-influenza vaccines would represent a major advance in the protection of human health. In order to facilitate the development of such vaccines, understanding how viral proteins can contribute to protection from disease is critical. Much of the previous work to address these questions relied on reductionist systems (i.e., vaccination with individual proteins or virus- like particles [VLPs] that contain only a few viral proteins); thus, we have an incomplete understanding of how immunity to different subsets of viral proteins contributes to protection. Here, we report the development of a platform in which a single viral protein can be deleted from an authentic viral particle that retains the remaining full complement of structural proteins and viral RNA. As a first study with this system, we chose to delete the major influenza A virus (IAV) antigen, the hemagglutinin (HA) protein, to evaluate how the other components of the viral particle contribute en masse to protection from influenza disease. Our results show that while anti-HA immunity plays a major role in protection from challenge with a vaccine-matched strain, the contributions from other structural proteins were the major drivers of protection against highly antigenically drifted, homosubtypic strains. This work highlights the importance of evaluating the inclusion of non-HA viral proteins in the development of broadly efficacious and long-lasting influenza vaccines.
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Duke CIVIC Vaccine Center (DCVC)
DOI: 10.21430/M3TX82XYNN
Subjects: 90
Study PI, contact:
NameOrganizationSite
Nicholas Heaton Duke University Duke University, Duke CIVICs Vaccine Center (DCVC)
Publications:
Engineered influenza virions reveal the contributions of non-hemagglutinin structural proteins to vaccine mediated protection.. Journal of virology Apr 2021. doi: 10.1128/JVI.02021-20 [Pubmed: 33658342]
Resources:
Not Applicable Not Applicable]
Assays:
Assay TypeNumber of Exp. Samples
ELISA 840
Hemagglutination Inhibition 30
Other 30
Clinical Assessments:
Not Applicable

SDY2661: Broadly Reactive H2 Hemagglutinin Vaccines Elicit Cross-Reactive Antibodies in Ferrets Preimmune to Seasonal Influenza A Viruses
Status: Updated
Description: In this study, previously described H2 computationally optimized broadly reactive antigen (COBRA) hemagglutinin vaccines (Z1 and Z5) were tested in influenza virus
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3CWE7D59L
Subjects: 180
Study PI, contact:
NameOrganizationSite
Ted Ross University of Georgia University of Georgia, Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
Publications:
Broadly Reactive H2 Hemagglutinin Vaccines Elicit Cross-Reactive Antibodies in Ferrets Preimmune to Seasonal Influenza A Viruses.. mSphere Mar 2021. doi: 10.1128/mSphere.00052-21 [Pubmed: 33692193]
Resources:
Not Applicable Not Applicable]
Assays:
Assay TypeNumber of Exp. Samples
Hemagglutination Inhibition 2879
Virus Neutralization 210
Virus Plaque Assay 468
Clinical Assessments:
Not Applicable

SDY2917: Enhanced placental antibody transfer efficiency with longer interval between maternal respiratory syncytial virus vaccination and birth
Status: Updated
Description: A prospective cohort study was conducted at 2 academic medical centers between September 20, 2023 and March 21, 2024, enrolling 124 individuals who received the respiratory syncytial virus vaccine during pregnancy. Infant capillary blood was collected at 2 months of age from 29 of the infants. Maternal and cord immunoglobulin G levels achieved by respiratory syncytial virus vaccination were compared to those associated with maternal natural respiratory syncytial virus infection, using banked blood from 20 maternal:cord dyads collected prior to the availability of the maternal respiratory syncytial virus vaccine. Levels of immunoglobulin G against respiratory syncytial virus strain A2 and B fusion (F) and attachment (G) proteins and against pertussis toxin (as a comparator antigen from a vaccine routinely administered earlier in pregnancy) were measured using a Binding Antibody Multiplex Assay. Differences in titers between vaccination and natural infection were examined using Wilcoxon rank-sum test. Differences in cord:maternal transfer ratios and 2-month infant antibody levels by timing of maternal vaccination were evaluated by Kruskal-Wallis testing.
Program/Contract:
ProgramContract
Human Immunology Project Consortium (HIPC) RFA-AI-20-079 Research Project 1 - The pregnancy ImmunOME
DOI: 10.21430/M3E6U41NW0
Subjects: 171
Study PI, contact:
NameOrganizationSite
Andrea G. Edlow Massachusetts General Hospital Massachusetts General Hospital
Michal A. Elovitz Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai
Ashley Nelson Weill Cornell Medicine Weill Cornell Medicine
Publications:
Enhanced placental antibody transfer efficiency with longer interval between maternal respiratory syncytial virus vaccination and birth.. American journal of obstetrics and gynecology Nov 2024. doi: 10.1016/j.ajog.2024.10.053 [Pubmed: 39515450]
Resources:
Enhanced placental antibody transfer efficiency with longer interval between maternal respiratory syncytial virus vaccination and birth - AJOG https://www.ajog.org/article/S0002-9378(24)01125-6/fulltext]
Assays:None
Clinical Assessments:None

SDY2931: SeroNet Longitudinal Study v4.2.1
Status: Updated
Description: The longitudinal serosurveillance study aimed to understand the immune responses to COVID-19 vaccination and SARS-CoV-2 infection. Between 2021 and 2024, four Capacity Building Centers (CBC) collected samples from 3284 participants (3119 are being released), including healthy and immunocompromised populations. Demographic and clinical data were collected for all participants, with 61% female, ages ranged from 0 to > 89 years, and 68% white. Among the 1,806 participants in the general population, 901 were in the Healthy cohort (no reported comorbidities), and 905 were in the Comorbidity cohort (with 1 or more reported comorbidities or chronic conditions). CBCs collected more detailed information from participants in select cohorts (e.g. time of diagnosis, treatment): 824 in Cancer, 162 in IBD, 146 in HIV and 181 transplant recipients. There were on average 4.7 visits per participant. Collection timepoints were strategically aligned for before and after vaccine administration or infection: 30, 60, 90, 120, 180 and 360 days. Vaccination status for participants range from unvaccinated to vaccinated with homologous and heterologous primary series and booster doses. Vaccines used were the licensed mRNA-based vaccines in the large majority of Janssen protein subunit vaccine in X% of cases. Data harmonization was achieved through SeroNet templates submitted by each CBC, validated for business rule compliance, then shipped to the NCI FNL Central Repository
Program/Contract:
ProgramContract
SeroNet Frederick National Laboratory for Cancer Research (FNLCR) Center for SARS-CoV-2 Serological Sciences
DOI: 10.21430/M3AXZXJN91
Subjects: 0
Study PI, contact:
NameOrganizationSite
Ligia Pinto Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Nancy Roche Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Thomas Hickey Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Patrick Breads Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Elaine Freund Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Anjan Purkayastha Frederick National Laboratory For Cancer Research Vaccine, Immunity And Cancer Directorate
Peter Gregersen Feinstein Institute For Medical Research Feinstein Institute For Medical Research
Amy Karger University of Minnesota University of Minnesota
Joshua Labaer Arizona State University Arizona State University
Carlos Cordon-cardo Icahn School of Medicine at Mount Sinai Icahn Scool of Medicine at Mt. Sinai
Vel Murugan Arizona State University Arizona State University
Michael Ritchie Arizona State University Arizona State University
Komal Srivastav Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai
Charles Gleason Icahn School of Medicine at Mount Sinai Icahn School of Medicine at Mount Sinai
Elena Kowalsky Feinstein Institute For Medical Research Feinstein Institute For Medical Research
Michael Ryan Feinstein Institute For Medical Research Feinstein Institute For Medical Research
Alex Mathson University of Minnesota University of Minnesota
Bharat Thyagarajan University of Minnesota University of Minnesota
Shreya Sanghani Feinstein Institute For Medical Research Feinstein Institute For Medical Research
Publications:None
Resources:
FNL Serology Portal https://frederick.cancer.gov/initiatives/seronet]
FNL Serology Laboratory Information https://frederick.cancer.gov/research/science-areas/vaccine-immunity-and-cancer-directorate/hpv-and-covid-19-serology-laboratories]
Assays:
Assay TypeNumber of Exp. Samples
Chemiluminescent Assay 0
ELISA 0
Clinical Assessments:None

SDY2934: CpG ACE-Dextran MP
Status: Updated
Description: CpG MP expressing COBRA elicits broadly reactive antibodies
Program/Contract:
ProgramContract
CIVICs Collaborative Influenza Vaccine Innovation Centers Center for Influenza Vaccine Research for High-Risk Populations (CIVR-HRP)
DOI: 10.21430/M3BYLWXJNY
Subjects: 52
Study PI, contact:
NameOrganizationSite
Kristy Ainslie University of North Carolina University of North Carolina, Center for Influenza Vaccine Research for High-Risk Populations
Publications:
Sustained delivery of CpG oligodeoxynucleotide by acetalated dextran microparticles augments effector response to Computationally Optimized Broadly Reactive Antigen (COBRA) influenza hemagglutinin.. International journal of pharmaceutics Jan 2023. doi: 10.1016/j.ijpharm.2022.122429 [Pubmed: 36436743]
Resources:
Not Applicable Not Applicable]
Assays:
Assay TypeNumber of Exp. Samples
ELISA 504
Hemagglutination Inhibition 0
Other 56
Clinical Assessments:
Not Applicable