PCR_result

Captures results from Real-time reverse-transcription PCR (qPCR) assays or other PCR assays.

Columns

Name	Type	Description	Foreign Key
result_id	int	Primary key
arm_accession	varchar(15)	Foreign key reference to the ARM_OR_COHORT table	arm_or_cohort.arm_accession
biosample_accession	varchar(15)	Foreign key reference to the BIOSAMPLE table	biosample.biosample_accession
comments	varchar(500)	Free text to expand upon details
experiment_accession	varchar(15)	Foreign key reference to the EXPERIMENT table	experiment.experiment_accession
expsample_accession	varchar(15)	Foreign key reference to the EXPSAMPLE table	expsample.expsample_accession
gene_id	varchar(10)	NCBI Gene ID
gene_name	varchar(4000)	Official gene name from the appropriate species specific nomenclature committee
analyte_accession	varchar(15)	Foreign key reference to the LK_ANALYTE table.	lk_analyte.analyte_accession
gene_symbol_preferred	varchar(100)	Preferred symbol from the lk_analyte table.
gene_symbol_reported	varchar(100)	Official gene symbol from the appropriate species specific nomenclature committee
other_gene_accession	varchar(250)	Official gene accession from the appropriate species specific nomenclature committee
repository_accession	varchar(20)	Foreign key reference to a public repository
repository_name	varchar(50)	Name or identifier
study_accession	varchar(15)	Foreign key reference to the STUDY table	study.study_accession
study_time_collected	float	Reported value
study_time_collected_unit	varchar(25)	Standardized value in LK_TIME_UNIT table
subject_accession	varchar(15)	Foreign key reference to the SUBJECT table	subject.subject_accession
unit_preferred	varchar(200)	Standardized value in LK_UNIT_OF_MEASURE	lk_unit_of_measure.name
unit_reported	varchar(200)	Reported unit
value_preferred	float	Standardized value
value_reported	varchar(50)	Reported value
workspace_id	int	Foreign key reference to WORKSPACE table	workspace.workspace_id

Indexes

Name	Column	Description
PRIMARY	result_id	BTREE
fk_pcr_result_1	expsample_accession	BTREE
fk_pcr_result_2	experiment_accession	BTREE
fk_pcr_result_3	study_accession	BTREE
fk_pcr_result_4	arm_accession	BTREE
fk_pcr_result_5	biosample_accession	BTREE
fk_pcr_result_6	subject_accession	BTREE
fk_pcr_result_7	workspace_id	BTREE
fk_pcr_result_8	unit_preferred	BTREE
fk_pcr_result_9	analyte_accession	BTREE

Tables that Reference this Table

Name	Column	Table Reference	Column Reference