Biosample

Material extracted from a subject that has undergone isolation, processing and/or treatment prior to use in an assay or test. Attributes include all treatments and reagents used for sample processing and EXCLUDE reagents used to measure analytes.

Columns

Name	Type	Description	Foreign Key
biosample_accession	varchar(15)	Primary key
description	varchar(4000)	Free text to expand upon details
name	varchar(200)	Name or identifier
planned_visit_accession	varchar(15)	Foreign key reference to PLANNED_VISIT table	planned_visit.planned_visit_accession
study_accession	varchar(15)	Foreign key reference to STUDY table	study.study_accession
study_time_collected	float	Reported value
study_time_collected_unit	varchar(25)	Standardized value in LK_TIME_UNIT table	lk_time_unit.name
study_time_t0_event	varchar(50)	Standardized value in LK_T0_EVENT table	lk_t0_event.name
study_time_t0_event_specify	varchar(50)	If 'Study Time T0 Event' = Other, this field specifies the study time T0 event.
subject_accession	varchar(15)	Foreign key reference to SUBJECT table	subject.subject_accession
subtype	varchar(50)	Entered by the data provider when term is not in the controlled vocabulary
type	varchar(50)	Category	lk_sample_type.name
workspace_id	int(11)	Foreign key reference to WORKSPACE table	workspace.workspace_id

Indexes

Name	Column	Description
PRIMARY	biosample_accession	BTREE
idx_biosample_subject	subject_accession	BTREE
idx_biosample_study	study_accession	BTREE
idx_biosample_planned_visit	planned_visit_accession	BTREE
idx_biosample_workspace	workspace_id	BTREE
fk_biosample_5	study_time_collected_unit	BTREE
fk_biosample_6	study_time_t0_event	BTREE
fk_biosample_8	type	BTREE

Tables that Reference this Table

Name	Column	Table Reference	Column Reference
biosample_2_treatment	biosample_accession	biosample	biosample_accession
elisa_result	biosample_accession	biosample	biosample_accession
elispot_result	biosample_accession	biosample	biosample_accession
expsample_2_biosample	biosample_accession	biosample	biosample_accession
fcs_analyzed_result	biosample_accession	biosample	biosample_accession
hai_result	biosample_accession	biosample	biosample_accession
hla_typing_result	biosample_accession	biosample	biosample_accession
kir_typing_result	biosample_accession	biosample	biosample_accession
lab_test	biosample_accession	biosample	biosample_accession
mass_spectrometry_result	biosample_accession	biosample	biosample_accession
mbaa_result	biosample_accession	biosample	biosample_accession
neut_ab_titer_result	biosample_accession	biosample	biosample_accession
pcr_result	biosample_accession	biosample	biosample_accession